Variant report

Variant	rs55953493
Chromosome Location	chr6:110375978-110375979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110369283..110371139-chr6:110374130..110376200,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11751592	0.86[EUR][1000 genomes]
rs11752273	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11752726	0.82[EUR][1000 genomes]
rs11753953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756044	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757333	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759874	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111403	0.86[EUR][1000 genomes]
rs17071246	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361499	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34164264	0.86[EUR][1000 genomes]
rs35265701	0.84[EUR][1000 genomes]
rs4413651	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638850	0.91[EUR][1000 genomes]
rs55725048	0.86[EUR][1000 genomes]
rs55748081	0.86[EUR][1000 genomes]
rs55817927	0.86[EUR][1000 genomes]
rs55913032	0.86[EUR][1000 genomes]
rs55960151	0.86[EUR][1000 genomes]
rs56092341	0.82[EUR][1000 genomes]
rs56209747	0.86[EUR][1000 genomes]
rs56806615	0.86[EUR][1000 genomes]
rs61562056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932203	0.82[EUR][1000 genomes]
rs73533808	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7750037	0.86[EUR][1000 genomes]
rs7751796	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753237	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763743	0.82[EUR][1000 genomes]
rs7772041	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879134	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110375000-110376600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:110375000-110380800	Weak transcription	Ovary	ovary
3	chr6:110375200-110376400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:110375200-110376400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:110375800-110376800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland

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