Variant report
| Variant | rs7751796 |
|---|---|
| Chromosome Location | chr6:110353232-110353233 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11752273 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11753953 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11755481 | 0.80[EUR][1000 genomes] |
| rs11755985 | 0.80[EUR][1000 genomes] |
| rs11756044 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11757333 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11757982 | 0.80[EUR][1000 genomes] |
| rs11759874 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17071246 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2005493 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2361499 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4413651 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55953493 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56131993 | 0.80[EUR][1000 genomes] |
| rs56272355 | 0.80[EUR][1000 genomes] |
| rs61562056 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6908582 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72934012 | 0.80[EUR][1000 genomes] |
| rs73533808 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7753237 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7772041 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs879134 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019690 | chr6:110102601-110360778 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1017642 | chr6:110252276-110386453 | Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv538417 | chr6:110252276-110386453 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:110345400-110361200 | Weak transcription | Right Atrium | heart |
| 2 | chr6:110353000-110360600 | Weak transcription | Primary T cells from cord blood | blood |
