Variant report

Variant	rs11752273
Chromosome Location	chr6:110361907-110361908
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:110213554..110214954-chr6:110360433..110361977,13	MCF-7	breast:
2	chr6:110025954..110027208-chr6:110359665..110362381,41	MCF-7	breast:
3	chr6:110024804..110028000-chr6:110359372..110362087,3	MCF-7	breast:
4	chr6:110213330..110215841-chr6:110359990..110362077,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11751592	0.81[EUR][1000 genomes]
rs11753953	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11756044	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757333	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759874	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17071246	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2005493	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2361499	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4413651	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638850	0.81[EUR][1000 genomes]
rs55725048	0.81[EUR][1000 genomes]
rs55953493	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56209747	0.81[EUR][1000 genomes]
rs61562056	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908582	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73533808	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751796	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753237	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772041	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs879134	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017642	chr6:110252276-110386453	Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv538417	chr6:110252276-110386453	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110360800-110362000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
2	chr6:110361000-110364600	Enhancers	Placenta	Placenta
3	chr6:110361400-110362400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:110361400-110362400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:110361400-110362600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:110361400-110362600	Weak transcription	Esophagus	oesophagus
7	chr6:110361400-110365400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:110361600-110362000	Enhancers	Primary B cells from cord blood	blood
9	chr6:110361600-110362200	Weak transcription	Thymus	Thymus
10	chr6:110361600-110362600	Enhancers	Fetal Thymus	thymus
11	chr6:110361600-110364000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:110361600-110364600	Weak transcription	GM12878-XiMat	blood
13	chr6:110361600-110364800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:110361600-110364800	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:110361600-110365200	Weak transcription	Right Atrium	heart
16	chr6:110361600-110366600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:110361800-110362400	Enhancers	Primary hematopoietic stem cells	blood
18	chr6:110361800-110364000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:110361800-110364200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr6:110361800-110364400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:110361800-110364800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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