Variant report

Variant	rs56095211
Chromosome Location	chr6:164281497-164281498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164197154..164198920-chr6:164280732..164282749,2	K562	blood:
2	chr6:164268990..164271906-chr6:164280285..164282030,2	K562	blood:
3	chr6:164280371..164282410-chr6:164287634..164290402,4	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16895451	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16895454	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2207443	0.84[EUR][1000 genomes]
rs34732286	0.81[EUR][1000 genomes]
rs34839002	0.81[AFR][1000 genomes]
rs35545234	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs67410945	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67424524	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67478587	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902564	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6907455	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6910184	0.82[EUR][1000 genomes]
rs6916946	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6927723	0.82[EUR][1000 genomes]
rs6929655	0.81[EUR][1000 genomes]
rs6938128	0.97[ASN][1000 genomes]
rs7759591	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164275600-164287000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:164280800-164281600	Enhancers	NH-A	brain
3	chr6:164281000-164282000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:164281000-164282000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:164281000-164282000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr6:164281000-164282200	Enhancers	Fetal Heart	heart
7	chr6:164281000-164282400	Enhancers	NHDF-Ad	bronchial
8	chr6:164281200-164281600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:164281200-164281800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:164281200-164281800	Enhancers	HSMM	muscle
11	chr6:164281200-164281800	Enhancers	HSMMtube	muscle
12	chr6:164281200-164282000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:164281200-164282000	Enhancers	Placenta	Placenta
14	chr6:164281200-164282200	Enhancers	Brain Germinal Matrix	brain
15	chr6:164281200-164282400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:164281200-164282600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:164281400-164281600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr6:164281400-164281600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:164281400-164281600	Enhancers	Right Atrium	heart
20	chr6:164281400-164282000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:164281400-164282000	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr6:164281400-164282000	Enhancers	Fetal Brain Female	brain
23	chr6:164281400-164282000	Flanking Active TSS	NHLF	lung
24	chr6:164281400-164282200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:164281400-164282600	Enhancers	Primary hematopoietic stem cells	blood
26	chr6:164281400-164282600	Flanking Active TSS	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links