Variant report

Variant	rs67424524
Chromosome Location	chr6:164287519-164287520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:164286588..164288806-chr6:164290710..164292692,2	K562	blood:
2	chr6:164285706..164289029-chr6:164295811..164300012,3	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13207179	0.82[EUR][1000 genomes]
rs16895356	0.82[EUR][1000 genomes]
rs16895451	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16895454	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2207443	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs34732286	0.82[EUR][1000 genomes]
rs34839002	0.90[AFR][1000 genomes]
rs35545234	0.93[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56095211	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67410945	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67478587	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6902564	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6907455	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6910184	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6916946	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6927723	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6929655	0.82[EUR][1000 genomes]
rs6938128	0.97[ASN][1000 genomes]
rs7741725	0.82[EUR][1000 genomes]
rs7759591	0.98[ASN][1000 genomes]
rs7765450	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv1798922	chr6:164257563-164298780	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164284200-164288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:164285000-164289000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:164285000-164293600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:164287000-164287800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:164287200-164287600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr6:164287200-164287600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:164287200-164288600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr6:164287200-164289000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:164287200-164289000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:164287400-164287600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr6:164287400-164287600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr6:164287400-164287600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:164287400-164288200	Enhancers	K562	blood
14	chr6:164287400-164288800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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