Variant report

Variant	rs34732286
Chromosome Location	chr6:164256486-164256487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164255106..164256985-chr6:164259960..164261989,2	K562	blood:
2	chr6:164253956..164257557-chr6:164262191..164265409,3	K562	blood:
3	chr6:164251847..164253881-chr6:164255463..164257688,2	K562	blood:

Variant related genes	Relation type
ENSG00000266128	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10484518	0.95[ASN][1000 genomes]
rs13194833	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13207179	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1475208	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1555228	0.97[ASN][1000 genomes]
rs16895346	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16895356	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2207443	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34811073	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34839002	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35390637	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35545234	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3967298	0.90[ASN][1000 genomes]
rs4709015	0.92[ASN][1000 genomes]
rs4709018	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4709758	0.92[ASN][1000 genomes]
rs4709759	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56095211	0.81[EUR][1000 genomes]
rs60028618	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66758520	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67410945	0.81[EUR][1000 genomes]
rs67424524	0.82[EUR][1000 genomes]
rs67478587	0.82[EUR][1000 genomes]
rs6908861	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6910184	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6911532	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6911882	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6916946	0.82[EUR][1000 genomes]
rs6922730	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6923240	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6927723	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6929655	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341259	0.92[ASN][1000 genomes]
rs7741725	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7742329	0.92[ASN][1000 genomes]
rs7742572	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7749407	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7765450	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7772777	0.95[ASN][1000 genomes]
rs9365609	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9365610	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164250000-164258200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:164255600-164256800	Weak transcription	Brain Germinal Matrix	brain
3	chr6:164255800-164258800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:164256000-164258400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:164256400-164256800	Flanking Active TSS	Fetal Heart	heart

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