The 2.0 version of rSNPBase

Variant report

Variant rs56143971
Chromosome Location chr3:178927111-178927112
allele A/C/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:178899200-178951800 Weak transcription K562 blood
2 chr3:178900000-178929800 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr3:178906400-178962400 Weak transcription HepG2 liver
4 chr3:178909000-178931400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr3:178909000-178947000 Weak transcription Ovary ovary
6 chr3:178911200-178953400 Weak transcription Gastric stomach
7 chr3:178912400-178978600 Weak transcription Right Ventricle heart
8 chr3:178912600-178947800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr3:178913000-178930800 Weak transcription Left Ventricle heart
10 chr3:178913000-178948200 Weak transcription Psoas Muscle Psoas
11 chr3:178913200-178945200 Weak transcription iPS-15b Cell Line embryonic stem cell
12 chr3:178913200-178947000 Weak transcription H1 Cell Line embryonic stem cell
13 chr3:178913200-178947000 Weak transcription Placenta Amnion Placenta Amnion
14 chr3:178913800-178954000 Weak transcription Fetal Heart heart
15 chr3:178913800-178969000 Weak transcription Small Intestine intestine
16 chr3:178914000-178928200 Weak transcription Brain Hippocampus Middle brain
17 chr3:178914200-178928000 Weak transcription Brain Inferior Temporal Lobe brain
18 chr3:178914200-178928000 Weak transcription Brain Substantia Nigra brain
19 chr3:178914200-178928200 Weak transcription Brain Anterior Caudate brain
20 chr3:178914600-178945200 Weak transcription HMEC breast
21 chr3:178914800-178927200 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr3:178914800-178927800 Weak transcription Primary T killer memory cells from peripheral blood blood
23 chr3:178914800-178928000 Weak transcription iPS-18 Cell Line embryonic stem cell
24 chr3:178914800-178928000 Weak transcription Colon Smooth Muscle Colon
25 chr3:178914800-178928000 Weak transcription Osteobl bone
26 chr3:178914800-178928200 Weak transcription Primary T helper naive cells from peripheral blood blood
27 chr3:178914800-178933400 Weak transcription ES-I3 Cell Line embryonic stem cell
28 chr3:178914800-178941400 Weak transcription GM12878-XiMat blood
29 chr3:178914800-178942800 Weak transcription NH-A brain
30 chr3:178914800-178948000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr3:178914800-178972800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
32 chr3:178915400-178929400 Weak transcription HSMMtube muscle
33 chr3:178915400-178931000 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr3:178915400-178946000 Weak transcription Stomach Mucosa stomach
35 chr3:178915400-178947000 Weak transcription NHDF-Ad bronchial
36 chr3:178915600-178947600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
37 chr3:178915800-178965200 Weak transcription Hela-S3 cervix
38 chr3:178916600-178932600 Strong transcription Primary monocytes fromperipheralblood blood
39 chr3:178916800-178930000 Strong transcription Primary B cells from cord blood blood
40 chr3:178917200-178932200 Strong transcription Primary T helper cells fromperipheralblood blood
41 chr3:178917400-178932600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr3:178917400-178932600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
43 chr3:178917400-178948400 Weak transcription Esophagus oesophagus
44 chr3:178917600-178930000 Strong transcription Primary Natural Killer cells fromperipheralblood blood
45 chr3:178917600-178931600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr3:178917600-178953800 Weak transcription Colonic Mucosa Colon
47 chr3:178918400-178928000 Strong transcription Adipose Nuclei Adipose
48 chr3:178918600-178931600 Strong transcription Primary neutrophils fromperipheralblood blood
49 chr3:178918600-178932800 Strong transcription Breast Myoepithelial Primary Cells Breast
50 chr3:178918800-178932600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --

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Last update: Aug 31, 2015