Variant report

Variant	rs9881887
Chromosome Location	chr3:178907571-178907572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:178889061..178891401-chr3:178905876..178907714,2	MCF-7	breast:
2	chr3:178903831..178906930-chr3:178907124..178910138,3	K562	blood:

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs1059691	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10936992	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10936994	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11706842	0.95[ASN][1000 genomes]
rs11708869	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11918324	0.97[ASN][1000 genomes]
rs11918587	0.95[ASN][1000 genomes]
rs11919383	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11922631	0.90[ASN][1000 genomes]
rs11924545	0.85[ASN][1000 genomes]
rs11924547	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11924600	0.85[ASN][1000 genomes]
rs11925655	0.95[ASN][1000 genomes]
rs12488074	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1568205	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17849071	0.97[ASN][1000 genomes]
rs1850504	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1970901	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1976765	0.95[ASN][1000 genomes]
rs2865082	0.97[ASN][1000 genomes]
rs3729674	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3729676	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3729682	0.97[ASN][1000 genomes]
rs3729694	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3960984	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3975510	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3975513	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3976507	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4080957	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4855093	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4855095	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55685804	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55933053	0.95[ASN][1000 genomes]
rs55961756	0.97[ASN][1000 genomes]
rs56095736	0.90[ASN][1000 genomes]
rs56143971	0.97[ASN][1000 genomes]
rs56372555	0.95[ASN][1000 genomes]
rs56378415	0.90[ASN][1000 genomes]
rs57299654	0.82[ASN][1000 genomes]
rs59340081	0.95[ASN][1000 genomes]
rs59408989	0.90[ASN][1000 genomes]
rs59922883	0.95[ASN][1000 genomes]
rs61796482	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61796483	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62408837	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6443619	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6443624	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6443625	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6443626	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6443627	0.95[ASN][1000 genomes]
rs6443628	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6443629	0.93[ASN][1000 genomes]
rs67562832	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67609137	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6765953	0.97[ASN][1000 genomes]
rs6767284	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6769154	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6769162	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6769508	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770267	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6771313	0.90[ASN][1000 genomes]
rs6774158	0.92[ASN][1000 genomes]
rs6777203	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6782557	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6786114	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6791153	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67920954	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6792189	0.95[ASN][1000 genomes]
rs6794252	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6797304	0.95[ASN][1000 genomes]
rs6798817	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6799756	0.95[ASN][1000 genomes]
rs6803076	0.88[ASN][1000 genomes]
rs6803219	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6806555	0.95[ASN][1000 genomes]
rs6806917	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6810246	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73051974	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73187264	0.97[ASN][1000 genomes]
rs73187276	0.97[ASN][1000 genomes]
rs7372645	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7612533	0.95[ASN][1000 genomes]
rs7614305	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7614418	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7615076	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7621329	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7621436	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7623154	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7624090	0.97[ASN][1000 genomes]
rs7627273	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7628855	0.95[ASN][1000 genomes]
rs7635669	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7636454	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7638323	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7638649	0.95[ASN][1000 genomes]
rs7641889	0.95[ASN][1000 genomes]
rs7641983	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7644648	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7646409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7648857	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7650809	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7651265	0.95[ASN][1000 genomes]
rs938752	0.95[ASN][1000 genomes]
rs9631497	0.90[ASN][1000 genomes]
rs9813190	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9819762	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9829903	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9831234	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9833438	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9838411	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9839519	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9841051	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9844270	0.90[ASN][1000 genomes]
rs9844482	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9850621	0.95[ASN][1000 genomes]
rs9862294	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9866361	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9877812	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178887200-178912000	Weak transcription	Thymus	Thymus
2	chr3:178896800-178912200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr3:178896800-178912400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr3:178897800-178919400	Weak transcription	Fetal Intestine Small	intestine
5	chr3:178899000-178907600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr3:178899200-178951800	Weak transcription	K562	blood
7	chr3:178900000-178929800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:178900400-178912200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:178900400-178912400	Weak transcription	NH-A	brain
10	chr3:178900600-178912000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:178900600-178912000	Weak transcription	Left Ventricle	heart
12	chr3:178900600-178912200	Weak transcription	Pancreas	Pancrea
13	chr3:178900800-178907800	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:178900800-178912400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr3:178900800-178913400	Weak transcription	Osteobl	bone
16	chr3:178901000-178907600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:178901000-178907600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr3:178901000-178913200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:178901200-178912600	Weak transcription	Liver	Liver
20	chr3:178902200-178907600	Weak transcription	Psoas Muscle	Psoas
21	chr3:178902200-178907600	Weak transcription	Right Atrium	heart
22	chr3:178902200-178907600	Weak transcription	Small Intestine	intestine
23	chr3:178902400-178908400	Weak transcription	Aorta	Aorta
24	chr3:178902800-178912000	Weak transcription	Fetal Thymus	thymus
25	chr3:178903400-178907600	Weak transcription	Adipose Nuclei	Adipose
26	chr3:178904000-178907800	Weak transcription	Right Ventricle	heart
27	chr3:178904000-178918600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:178904400-178907600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr3:178904400-178912400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:178904400-178912800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr3:178904400-178912800	Weak transcription	Brain Substantia Nigra	brain
32	chr3:178904600-178907600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr3:178904600-178907600	Weak transcription	HSMMtube	muscle
34	chr3:178904600-178913000	Weak transcription	Primary B cells from cord blood	blood
35	chr3:178904800-178907800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr3:178904800-178916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr3:178905000-178912200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:178905800-178909000	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr3:178906000-178908000	Enhancers	Primary T helper cells fromperipheralblood	blood
40	chr3:178906000-178909000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr3:178906000-178909200	Enhancers	Primary T helper cells PMA-I stimulated	--
42	chr3:178906200-178907600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr3:178906200-178907800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:178906200-178912200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr3:178906400-178912600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr3:178906400-178962400	Weak transcription	HepG2	liver
47	chr3:178906600-178909200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr3:178906800-178908400	Enhancers	Fetal Heart	heart
49	chr3:178906800-178910000	Enhancers	Fetal Stomach	stomach
50	chr3:178907000-178907600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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