Variant report

Variant	rs9841051
Chromosome Location	chr3:178900436-178900437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:178899642..178902077-chr3:178904169..178907313,3	K562	blood:
2	chr3:178898456..178900555-chr3:179010797..179013245,2	K562	blood:
3	chr3:178898160..178900976-chr3:178901666..178903620,2	K562	blood:
4	chr3:178899086..178902051-chr3:178909040..178911935,2	K562	blood:
5	chr3:178899086..178902333-chr3:178909040..178911935,3	K562	blood:
6	chr3:178864222..178867700-chr3:178899476..178901902,3	K562	blood:

Variant related genes	Relation type
ENSG00000121879	Chromatin interaction
ENSG00000229102	Chromatin interaction

Extended variants
information (count: 120 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:115)

rs_ID	r²[population]
rs1059691	0.98[ASN][1000 genomes]
rs10936992	0.98[ASN][1000 genomes]
rs10936994	0.88[ASN][1000 genomes]
rs11706842	0.88[ASN][1000 genomes]
rs11708869	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11918324	0.90[ASN][1000 genomes]
rs11918587	0.88[ASN][1000 genomes]
rs11919383	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11922631	0.98[ASN][1000 genomes]
rs11924547	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11925655	0.88[ASN][1000 genomes]
rs12488074	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1568205	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17849071	0.90[ASN][1000 genomes]
rs1850504	0.88[ASN][1000 genomes]
rs1970901	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1976765	0.88[ASN][1000 genomes]
rs2865082	0.90[ASN][1000 genomes]
rs3729674	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3729676	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3729682	0.90[ASN][1000 genomes]
rs3729694	0.86[ASN][1000 genomes]
rs3960984	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs3975510	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3975513	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3976507	0.88[ASN][1000 genomes]
rs4080957	0.98[ASN][1000 genomes]
rs4855093	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4855095	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs55685804	0.90[ASN][1000 genomes]
rs55933053	0.88[ASN][1000 genomes]
rs55961756	0.90[ASN][1000 genomes]
rs56095736	0.98[ASN][1000 genomes]
rs56143971	0.90[ASN][1000 genomes]
rs56372555	0.88[ASN][1000 genomes]
rs56378415	0.83[ASN][1000 genomes]
rs59340081	0.88[ASN][1000 genomes]
rs59408989	0.93[ASN][1000 genomes]
rs59922883	0.88[ASN][1000 genomes]
rs61796482	0.90[ASN][1000 genomes]
rs61796483	0.84[ASN][1000 genomes]
rs62408837	0.90[ASN][1000 genomes]
rs6443619	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6443624	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6443625	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6443626	0.88[ASN][1000 genomes]
rs6443627	0.88[ASN][1000 genomes]
rs6443628	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6443629	0.95[ASN][1000 genomes]
rs67562832	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs67609137	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6765953	0.90[ASN][1000 genomes]
rs6767284	0.88[ASN][1000 genomes]
rs6769154	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6769162	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6769508	0.88[ASN][1000 genomes]
rs6770267	0.88[ASN][1000 genomes]
rs6771313	0.98[ASN][1000 genomes]
rs6774158	0.86[ASN][1000 genomes]
rs6777203	0.90[ASN][1000 genomes]
rs6782557	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6786114	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6791153	0.90[ASN][1000 genomes]
rs67920954	0.90[ASN][1000 genomes]
rs6792189	0.88[ASN][1000 genomes]
rs6794252	0.93[ASN][1000 genomes]
rs6797304	0.88[ASN][1000 genomes]
rs6798817	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6799756	0.88[ASN][1000 genomes]
rs6803076	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs6803219	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6806555	0.88[ASN][1000 genomes]
rs6806917	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6810246	0.88[ASN][1000 genomes]
rs73051974	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs73187264	0.90[ASN][1000 genomes]
rs73187276	0.90[ASN][1000 genomes]
rs7372645	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7612533	0.88[ASN][1000 genomes]
rs7614305	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7614418	0.90[ASN][1000 genomes]
rs7615076	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs7621329	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7621436	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7623154	0.90[ASN][1000 genomes]
rs7624090	0.90[ASN][1000 genomes]
rs7627273	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7628855	0.88[ASN][1000 genomes]
rs7635669	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7636454	0.90[ASN][1000 genomes]
rs7638323	0.90[ASN][1000 genomes]
rs7638649	0.88[ASN][1000 genomes]
rs7641889	0.88[ASN][1000 genomes]
rs7641983	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7644648	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs7646409	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7648857	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7650809	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7651265	0.88[ASN][1000 genomes]
rs938752	0.88[ASN][1000 genomes]
rs9631497	0.83[ASN][1000 genomes]
rs9813190	0.98[ASN][1000 genomes]
rs9819762	0.90[ASN][1000 genomes]
rs9829903	0.98[ASN][1000 genomes]
rs9831234	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9833438	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9838411	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9839519	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9844270	0.98[ASN][1000 genomes]
rs9844482	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9850621	0.88[ASN][1000 genomes]
rs9862294	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9866361	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9877812	0.88[ASN][1000 genomes]
rs9881887	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	esv3354111	chr3:178833305-179156908	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv963506	chr3:178897583-178904531	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv524471	chr3:178897674-178903264	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178883800-178905800	Weak transcription	Fetal Kidney	kidney
2	chr3:178887200-178912000	Weak transcription	Thymus	Thymus
3	chr3:178893800-178900800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr3:178894200-178905800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:178894400-178903400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:178895600-178904400	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:178896200-178900600	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr3:178896200-178903600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr3:178896400-178902800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr3:178896400-178905000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:178896600-178900600	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr3:178896600-178900800	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr3:178896600-178902200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr3:178896600-178904200	Enhancers	Colon Smooth Muscle	Colon
15	chr3:178896800-178902000	Weak transcription	Gastric	stomach
16	chr3:178896800-178912200	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr3:178896800-178912400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr3:178897000-178900800	Enhancers	HSMM	muscle
19	chr3:178897000-178901800	Weak transcription	Psoas Muscle	Psoas
20	chr3:178897000-178902000	Weak transcription	Aorta	Aorta
21	chr3:178897400-178900800	Enhancers	Osteobl	bone
22	chr3:178897600-178900600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr3:178897600-178900600	Enhancers	Brain Hippocampus Middle	brain
24	chr3:178897600-178900800	Enhancers	Brain Anterior Caudate	brain
25	chr3:178897600-178901000	Enhancers	Brain Substantia Nigra	brain
26	chr3:178897600-178901000	Enhancers	NHDF-Ad	bronchial
27	chr3:178897600-178901000	Enhancers	NHLF	lung
28	chr3:178897600-178904600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
29	chr3:178897800-178900600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr3:178897800-178901000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr3:178897800-178906800	Weak transcription	Fetal Stomach	stomach
32	chr3:178897800-178919400	Weak transcription	Fetal Intestine Small	intestine
33	chr3:178898000-178900600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr3:178898000-178900800	Enhancers	Rectal Smooth Muscle	rectum
35	chr3:178898000-178901000	Enhancers	Brain Germinal Matrix	brain
36	chr3:178898000-178901200	Enhancers	Liver	Liver
37	chr3:178898200-178900600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr3:178898400-178900600	Enhancers	Fetal Brain Female	brain
39	chr3:178898400-178901200	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr3:178898600-178900600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr3:178898600-178901000	Enhancers	Primary hematopoietic stem cells	blood
42	chr3:178898600-178901000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr3:178898600-178903400	Enhancers	Adipose Nuclei	Adipose
44	chr3:178898800-178900600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:178898800-178900800	Weak transcription	Fetal Lung	lung
46	chr3:178898800-178901200	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr3:178899000-178901000	Enhancers	Primary B cells from cord blood	blood
48	chr3:178899000-178901000	Enhancers	Muscle Satellite Cultured Cells	--
49	chr3:178899000-178901800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr3:178899000-178907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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