Variant report

Variant	rs56159571
Chromosome Location	chr8:49883813-49883814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56328451	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57684654	1.00[AMR][1000 genomes]
rs58305863	1.00[AMR][1000 genomes]
rs72640599	1.00[AMR][1000 genomes]
rs73678304	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678312	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678314	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678332	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678334	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678539	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678541	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678560	1.00[AMR][1000 genomes]
rs73680750	1.00[AMR][1000 genomes]
rs73680751	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680752	1.00[AMR][1000 genomes]
rs73680755	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024584	chr8:49879137-49906780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49881600-49889400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:49883600-49885200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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