Variant report

Variant	rs73678334
Chromosome Location	chr8:49989022-49989023
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs56159571	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56328451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57684654	1.00[AMR][1000 genomes]
rs58305863	1.00[AMR][1000 genomes]
rs72640599	1.00[AMR][1000 genomes]
rs73678304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678560	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679294	1.00[AMR][1000 genomes]
rs73679295	1.00[AMR][1000 genomes]
rs73679296	1.00[AMR][1000 genomes]
rs73679298	1.00[AMR][1000 genomes]
rs73680750	1.00[AMR][1000 genomes]
rs73680751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680752	1.00[AMR][1000 genomes]
rs73680755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv3401785	chr8:49986448-50018640	Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49984600-49991400	Weak transcription	K562	blood
2	chr8:49987200-49998800	Weak transcription	Psoas Muscle	Psoas
3	chr8:49988000-49989400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:49989000-49990800	Weak transcription	Gastric	stomach
5	chr8:49989000-49990800	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links