Variant report

Variant	rs73678314
Chromosome Location	chr8:49965875-49965876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs56159571	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56328451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57684654	1.00[AMR][1000 genomes]
rs58305863	1.00[AMR][1000 genomes]
rs72640599	1.00[AMR][1000 genomes]
rs73678304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678560	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679294	1.00[AMR][1000 genomes]
rs73679295	1.00[AMR][1000 genomes]
rs73680750	1.00[AMR][1000 genomes]
rs73680751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680752	1.00[AMR][1000 genomes]
rs73680755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49965200-49966600	Weak transcription	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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