Variant report
| Variant | rs73679294 |
|---|---|
| Chromosome Location | chr8:50133445-50133446 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:50130806..50133714-chr8:50138525..50141483,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs56328451 | 1.00[AMR][1000 genomes] |
| rs58739325 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59078589 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73678312 | 1.00[AMR][1000 genomes] |
| rs73678314 | 1.00[AMR][1000 genomes] |
| rs73678332 | 1.00[AMR][1000 genomes] |
| rs73678334 | 1.00[AMR][1000 genomes] |
| rs73678539 | 1.00[AMR][1000 genomes] |
| rs73678541 | 1.00[AMR][1000 genomes] |
| rs73678560 | 1.00[AMR][1000 genomes] |
| rs73679295 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73679296 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73679298 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73679300 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73679302 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73679505 | 1.00[AMR][1000 genomes] |
| rs73679518 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73679520 | 1.00[AMR][1000 genomes] |
| rs73679524 | 0.89[AFR][1000 genomes] |
| rs73679526 | 0.89[AFR][1000 genomes] |
| rs73679528 | 0.89[AFR][1000 genomes] |
| rs73679529 | 0.89[AFR][1000 genomes] |
| rs73681607 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73681614 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1025068 | chr8:49953397-50370208 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1034908 | chr8:50023423-50416049 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv539601 | chr8:50023423-50416049 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1024410 | chr8:50037085-50511501 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv428517 | chr8:50094920-50232993 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv890855 | chr8:50109365-50252962 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:50131800-50133800 | Enhancers | K562 | blood |
| 2 | chr8:50132400-50141000 | Weak transcription | Stomach Mucosa | stomach |
