Variant report

Variant	rs73678560
Chromosome Location	chr8:50039941-50039942
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs56159571	1.00[AMR][1000 genomes]
rs56328451	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57684654	1.00[AMR][1000 genomes]
rs58305863	1.00[AMR][1000 genomes]
rs72640599	1.00[AMR][1000 genomes]
rs73678304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678312	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678314	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678334	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678541	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679294	1.00[AMR][1000 genomes]
rs73679295	1.00[AMR][1000 genomes]
rs73679296	1.00[AMR][1000 genomes]
rs73679298	1.00[AMR][1000 genomes]
rs73679300	1.00[AMR][1000 genomes]
rs73679302	1.00[AMR][1000 genomes]
rs73680750	1.00[AMR][1000 genomes]
rs73680751	1.00[AMR][1000 genomes]
rs73680752	1.00[AMR][1000 genomes]
rs73680755	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73681607	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025068	chr8:49953397-50370208	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1023325	chr8:49994793-50050571	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1793350	chr8:50013702-50102628	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50039800-50040200	Flanking Active TSS	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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