Variant report

Variant	rs73680751
Chromosome Location	chr8:49892348-49892349
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56159571	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56328451	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57684654	1.00[AMR][1000 genomes]
rs58305863	1.00[AMR][1000 genomes]
rs72640599	1.00[AMR][1000 genomes]
rs73678304	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678312	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678314	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678332	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678334	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678539	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678541	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73678560	1.00[AMR][1000 genomes]
rs73680750	1.00[AMR][1000 genomes]
rs73680752	1.00[AMR][1000 genomes]
rs73680755	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024584	chr8:49879137-49906780	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	nsv6181	chr8:49885342-49930514	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49891600-49892400	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:49891600-49892600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:49891600-49893000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:49891800-49892400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr8:49892000-49892400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:49892000-49892400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:49892000-49892400	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr8:49892000-49892600	Enhancers	Brain Anterior Caudate	brain
9	chr8:49892000-49892600	Enhancers	Stomach Mucosa	stomach
10	chr8:49892000-49892600	Enhancers	Hela-S3	cervix
11	chr8:49892000-49892800	Enhancers	Fetal Lung	lung
12	chr8:49892200-49892400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:49892200-49892400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr8:49892200-49896600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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