Variant report

Variant	rs56161339
Chromosome Location	chr8:119849972-119849973
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11573802	1.00[AMR][1000 genomes]
rs11573848	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57109880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58764451	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60266099	1.00[AMR][1000 genomes]
rs73709008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709016	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709017	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709344	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709345	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709355	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709372	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709376	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709391	1.00[AMR][1000 genomes]
rs73709525	1.00[AMR][1000 genomes]
rs73711407	1.00[AMR][1000 genomes]
rs73711931	1.00[AMR][1000 genomes]
rs7813077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119848200-119851600	Enhancers	Hela-S3	cervix
2	chr8:119848200-119852200	Enhancers	HMEC	breast
3	chr8:119848800-119850600	Enhancers	Fetal Intestine Small	intestine
4	chr8:119848800-119852200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:119849000-119850200	Enhancers	Fetal Intestine Large	intestine
6	chr8:119849000-119850800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr8:119849200-119850200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr8:119849400-119850000	Enhancers	HUVEC	blood vessel
9	chr8:119849400-119850400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:119849400-119850400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:119849400-119850600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr8:119849400-119850600	Enhancers	NHEK	skin
13	chr8:119849600-119850200	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr8:119849600-119850400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:119849800-119850400	Enhancers	Duodenum Mucosa	Duodenum
16	chr8:119849800-119850400	Enhancers	HSMM	muscle
17	chr8:119849800-119850400	Enhancers	NH-A	brain
18	chr8:119849800-119850400	Enhancers	Osteobl	bone
19	chr8:119849800-119851400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links