Variant report

Variant	rs73709016
Chromosome Location	chr8:119851239-119851240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11573802	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573848	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56161339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57109880	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58764451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348639	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60266099	1.00[AMR][1000 genomes]
rs73709008	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709027	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709338	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709341	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709372	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709376	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709391	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709525	1.00[AMR][1000 genomes]
rs73711407	1.00[AMR][1000 genomes]
rs73711931	1.00[AMR][1000 genomes]
rs7813077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119848200-119851600	Enhancers	Hela-S3	cervix
2	chr8:119848200-119852200	Enhancers	HMEC	breast
3	chr8:119848800-119852200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:119849800-119851400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:119850200-119853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr8:119850400-119855400	Weak transcription	NH-A	brain
7	chr8:119850400-119855600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr8:119850400-119855600	Weak transcription	HSMM	muscle
9	chr8:119850400-119855600	Weak transcription	Osteobl	bone
10	chr8:119850400-119856200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr8:119851000-119851800	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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