Variant report
| Variant | rs7826523 |
|---|---|
| Chromosome Location | chr8:119837895-119837896 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:119837387..119840047-chr8:119922845..119924713,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11573802 | 1.00[AMR][1000 genomes] |
| rs11573848 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56161339 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57109880 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58764451 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59348639 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60266099 | 1.00[AMR][1000 genomes] |
| rs73709008 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709016 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709017 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709021 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709027 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709338 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709341 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709344 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709345 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709355 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709372 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709376 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73709391 | 1.00[AMR][1000 genomes] |
| rs73711407 | 1.00[AMR][1000 genomes] |
| rs73711931 | 1.00[AMR][1000 genomes] |
| rs7813077 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7819275 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891414 | chr8:119755490-119881550 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv831444 | chr8:119757355-119915966 | Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:119827800-119839000 | Weak transcription | Aorta | Aorta |
| 2 | chr8:119837800-119848200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
