Variant report

Variant	rs60266099
Chromosome Location	chr8:120031717-120031718
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11573802	1.00[AMR][1000 genomes]
rs11573848	1.00[AMR][1000 genomes]
rs56161339	1.00[AMR][1000 genomes]
rs57109880	1.00[AMR][1000 genomes]
rs58764451	1.00[AMR][1000 genomes]
rs59348639	1.00[AMR][1000 genomes]
rs73709008	1.00[AMR][1000 genomes]
rs73709016	1.00[AMR][1000 genomes]
rs73709017	1.00[AMR][1000 genomes]
rs73709021	1.00[AMR][1000 genomes]
rs73709027	1.00[AMR][1000 genomes]
rs73709338	1.00[AMR][1000 genomes]
rs73709341	1.00[AMR][1000 genomes]
rs73709344	1.00[AMR][1000 genomes]
rs73709345	1.00[AMR][1000 genomes]
rs73709355	1.00[AMR][1000 genomes]
rs73709372	1.00[AMR][1000 genomes]
rs73709376	1.00[AMR][1000 genomes]
rs73709391	1.00[AMR][1000 genomes]
rs73709525	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73711407	1.00[AMR][1000 genomes]
rs7819275	1.00[AMR][1000 genomes]
rs7826523	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868916	chr8:119911943-120762250	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2758169	chr8:119943309-120275750	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv2759639	chr8:119943309-120275750	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv437631	chr8:120015963-120051656	Enhancers Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:120030200-120038200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:120031600-120033600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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