Variant report

Variant	rs73709344
Chromosome Location	chr8:119889000-119889001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11573802	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573848	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56161339	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57109880	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58764451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348639	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60266099	1.00[AMR][1000 genomes]
rs73709008	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709017	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709021	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709027	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709338	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709341	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709355	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709372	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709376	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709391	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709525	1.00[AMR][1000 genomes]
rs73711407	1.00[AMR][1000 genomes]
rs73711931	1.00[AMR][1000 genomes]
rs7813077	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7819275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7826523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv470234	chr8:119856209-119906530	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv891415	chr8:119886923-119921354	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119879000-119889800	Weak transcription	Pancreas	Pancrea
2	chr8:119879200-119889600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:119879400-119890000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:119880800-119889600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr8:119882400-119889800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:119887200-119889600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr8:119888200-119890600	Enhancers	Fetal Intestine Small	intestine
8	chr8:119888200-119891800	Enhancers	Fetal Intestine Large	intestine
9	chr8:119889000-119895200	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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