Variant report

Variant	rs56259756
Chromosome Location	chr3:24170661-24170662
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11920383	1.00[EUR][1000 genomes]
rs11924501	1.00[EUR][1000 genomes]
rs11924778	1.00[EUR][1000 genomes]
rs17014086	1.00[EUR][1000 genomes]
rs17014087	1.00[EUR][1000 genomes]
rs1900996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1900997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4377442	1.00[EUR][1000 genomes]
rs4467390	1.00[EUR][1000 genomes]
rs56711878	1.00[EUR][1000 genomes]
rs58538965	1.00[EUR][1000 genomes]
rs58996984	1.00[EUR][1000 genomes]
rs59740610	1.00[EUR][1000 genomes]
rs60523116	1.00[EUR][1000 genomes]
rs60723945	1.00[EUR][1000 genomes]
rs61543192	1.00[EUR][1000 genomes]
rs6550843	1.00[EUR][1000 genomes]
rs73134545	1.00[EUR][1000 genomes]
rs73134552	1.00[EUR][1000 genomes]
rs73134553	1.00[EUR][1000 genomes]
rs73134559	1.00[EUR][1000 genomes]
rs73822689	1.00[EUR][1000 genomes]
rs73822697	1.00[EUR][1000 genomes]
rs73822701	1.00[EUR][1000 genomes]
rs73825908	1.00[EUR][1000 genomes]
rs73825915	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825916	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825917	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825918	1.00[EUR][1000 genomes]
rs73825919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7637983	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24156400-24187800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:24157400-24173000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr3:24160400-24173000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:24161200-24173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:24161200-24176400	Weak transcription	Pancreas	Pancrea
6	chr3:24161800-24173000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:24162800-24178200	Weak transcription	Spleen	Spleen
8	chr3:24165000-24173400	Weak transcription	Right Ventricle	heart
9	chr3:24165200-24173200	Weak transcription	Placenta	Placenta
10	chr3:24165800-24171400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:24165800-24179000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr3:24167000-24197800	Weak transcription	K562	blood
13	chr3:24167800-24187800	Weak transcription	Small Intestine	intestine
14	chr3:24168600-24179200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:24168800-24181200	Weak transcription	Brain Angular Gyrus	brain
16	chr3:24169000-24171600	Enhancers	NHLF	lung
17	chr3:24169000-24173000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:24169000-24187800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:24169200-24171200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:24169200-24171200	Weak transcription	Fetal Stomach	stomach
21	chr3:24169200-24171600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:24169200-24171600	Weak transcription	Aorta	Aorta
23	chr3:24169200-24171600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:24169200-24172000	Enhancers	Fetal Lung	lung
25	chr3:24169400-24171000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr3:24169400-24171000	Enhancers	Muscle Satellite Cultured Cells	--
27	chr3:24169400-24171200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:24169400-24171400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr3:24169400-24171600	Enhancers	HMEC	breast
30	chr3:24169400-24173000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:24169400-24174200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr3:24169600-24170800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr3:24169600-24170800	Enhancers	Adipose Nuclei	Adipose
34	chr3:24169600-24171000	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr3:24169600-24171200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr3:24169600-24171200	Enhancers	NHDF-Ad	bronchial
37	chr3:24169600-24171400	Enhancers	Colon Smooth Muscle	Colon
38	chr3:24169600-24171400	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr3:24169600-24171600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr3:24169600-24171600	Enhancers	NHEK	skin
41	chr3:24169800-24170800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr3:24169800-24171000	Enhancers	HSMM	muscle
43	chr3:24169800-24171000	Enhancers	HSMMtube	muscle
44	chr3:24169800-24171200	Weak transcription	Brain Germinal Matrix	brain
45	chr3:24169800-24186200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr3:24170000-24170800	Enhancers	Osteobl	bone
47	chr3:24170000-24171200	Weak transcription	Right Atrium	heart
48	chr3:24170000-24171400	Weak transcription	Fetal Intestine Large	intestine
49	chr3:24170000-24171800	Enhancers	Hela-S3	cervix
50	chr3:24170000-24173000	Weak transcription	Esophagus	oesophagus

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