Variant report

Variant	rs58996984
Chromosome Location	chr3:24120903-24120904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11920383	1.00[EUR][1000 genomes]
rs11924501	1.00[EUR][1000 genomes]
rs11924778	1.00[EUR][1000 genomes]
rs17014086	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1900996	1.00[EUR][1000 genomes]
rs1900997	1.00[EUR][1000 genomes]
rs2089850	1.00[AMR][1000 genomes]
rs4377442	1.00[EUR][1000 genomes]
rs4467390	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4510334	1.00[AMR][1000 genomes]
rs56229046	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56259756	1.00[EUR][1000 genomes]
rs56711878	1.00[EUR][1000 genomes]
rs58538965	1.00[EUR][1000 genomes]
rs59740610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60523116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60723945	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61543192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6550843	1.00[EUR][1000 genomes]
rs73134545	1.00[EUR][1000 genomes]
rs73134552	1.00[EUR][1000 genomes]
rs73134553	1.00[EUR][1000 genomes]
rs73134559	1.00[EUR][1000 genomes]
rs73822649	1.00[AMR][1000 genomes]
rs73822653	1.00[AMR][1000 genomes]
rs73822689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822701	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825905	1.00[AMR][1000 genomes]
rs73825908	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825909	1.00[AMR][1000 genomes]
rs73825915	1.00[EUR][1000 genomes]
rs73825916	1.00[EUR][1000 genomes]
rs73825917	1.00[EUR][1000 genomes]
rs73825918	1.00[EUR][1000 genomes]
rs73825919	1.00[EUR][1000 genomes]
rs73825920	1.00[EUR][1000 genomes]
rs7637983	1.00[EUR][1000 genomes]
rs873451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24119600-24128200	Weak transcription	Aorta	Aorta

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