Variant report

Variant	rs73822649
Chromosome Location	chr3:24052134-24052135
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11923991	1.00[AMR][1000 genomes]
rs17014086	1.00[AMR][1000 genomes]
rs17014087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2089850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4467390	1.00[AMR][1000 genomes]
rs4510334	1.00[AMR][1000 genomes]
rs56229046	1.00[AMR][1000 genomes]
rs58996984	1.00[AMR][1000 genomes]
rs59740610	1.00[AMR][1000 genomes]
rs60523116	1.00[AMR][1000 genomes]
rs60723945	1.00[AMR][1000 genomes]
rs61543192	1.00[AMR][1000 genomes]
rs73822653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822689	1.00[AMR][1000 genomes]
rs73822697	1.00[AMR][1000 genomes]
rs73822701	1.00[AMR][1000 genomes]
rs73825905	1.00[AMR][1000 genomes]
rs73825908	1.00[AMR][1000 genomes]
rs73825909	1.00[AMR][1000 genomes]
rs873451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24036000-24053400	Weak transcription	Psoas Muscle	Psoas
2	chr3:24046400-24060200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr3:24051800-24052600	Enhancers	Hela-S3	cervix
4	chr3:24051800-24055000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:24051800-24055000	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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