Variant report

Variant	rs17014086
Chromosome Location	chr3:24090343-24090344
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24082962..24085298-chr3:24090200..24092155,2	K562	blood:
2	chr3:24086798..24089297-chr3:24089834..24092711,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11920383	1.00[EUR][1000 genomes]
rs11923991	1.00[AMR][1000 genomes]
rs11924501	1.00[EUR][1000 genomes]
rs11924778	1.00[EUR][1000 genomes]
rs17014087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1900996	1.00[EUR][1000 genomes]
rs1900997	1.00[EUR][1000 genomes]
rs2089850	1.00[AMR][1000 genomes]
rs4377442	1.00[EUR][1000 genomes]
rs4467390	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4510334	1.00[AMR][1000 genomes]
rs56229046	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56259756	1.00[EUR][1000 genomes]
rs56711878	1.00[EUR][1000 genomes]
rs58538965	1.00[EUR][1000 genomes]
rs58996984	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59740610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60523116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60723945	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61543192	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6550843	1.00[EUR][1000 genomes]
rs73134545	1.00[EUR][1000 genomes]
rs73134552	1.00[EUR][1000 genomes]
rs73134553	1.00[EUR][1000 genomes]
rs73134559	1.00[EUR][1000 genomes]
rs73822649	1.00[AMR][1000 genomes]
rs73822653	1.00[AMR][1000 genomes]
rs73822689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822701	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825905	1.00[AMR][1000 genomes]
rs73825908	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825909	1.00[AMR][1000 genomes]
rs73825915	1.00[EUR][1000 genomes]
rs73825916	1.00[EUR][1000 genomes]
rs73825917	1.00[EUR][1000 genomes]
rs73825918	1.00[EUR][1000 genomes]
rs73825919	1.00[EUR][1000 genomes]
rs73825920	1.00[EUR][1000 genomes]
rs7637983	1.00[EUR][1000 genomes]
rs873451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2527637	chr3:24090223-24091668	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079600-24090400	Weak transcription	Lung	lung
2	chr3:24088200-24091400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:24088400-24091800	Enhancers	NHDF-Ad	bronchial
4	chr3:24088600-24090600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:24088600-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr3:24088600-24090800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:24088800-24090600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:24088800-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:24088800-24090600	Enhancers	Colon Smooth Muscle	Colon
10	chr3:24088800-24090600	Enhancers	Hela-S3	cervix
11	chr3:24088800-24090600	Enhancers	NHEK	skin
12	chr3:24088800-24090600	Enhancers	Osteobl	bone
13	chr3:24088800-24090800	Enhancers	Adipose Nuclei	Adipose
14	chr3:24088800-24090800	Enhancers	Placenta	Placenta
15	chr3:24088800-24090800	Enhancers	Ovary	ovary
16	chr3:24088800-24090800	Enhancers	HMEC	breast
17	chr3:24088800-24090800	Enhancers	NHLF	lung
18	chr3:24088800-24091400	Enhancers	HSMMtube	muscle
19	chr3:24089000-24090600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:24089000-24090600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr3:24089000-24090600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr3:24089000-24090600	Enhancers	Aorta	Aorta
23	chr3:24089200-24090400	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr3:24089200-24090600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr3:24089200-24090600	Enhancers	Rectal Smooth Muscle	rectum
26	chr3:24089400-24090600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:24089800-24091600	Weak transcription	Psoas Muscle	Psoas
28	chr3:24089800-24092800	Weak transcription	A549	lung
29	chr3:24090000-24090600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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