Variant report
| Variant | rs4510334 |
|---|---|
| Chromosome Location | chr3:24116805-24116806 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:17843455..17846327-chr3:24116339..24117839,2 | MCF-7 | breast: |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-THRB-4 | chr3:24116469-24118041 | l_2333_NR_026834 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs17014086 | 1.00[AMR][1000 genomes] |
| rs17014087 | 1.00[AMR][1000 genomes] |
| rs2089850 | 1.00[AMR][1000 genomes] |
| rs4467390 | 1.00[AMR][1000 genomes] |
| rs56229046 | 1.00[AMR][1000 genomes] |
| rs58996984 | 1.00[AMR][1000 genomes] |
| rs59740610 | 1.00[AMR][1000 genomes] |
| rs60523116 | 1.00[AMR][1000 genomes] |
| rs60723945 | 1.00[AMR][1000 genomes] |
| rs61543192 | 1.00[AMR][1000 genomes] |
| rs73822649 | 1.00[AMR][1000 genomes] |
| rs73822653 | 1.00[AMR][1000 genomes] |
| rs73822689 | 1.00[AMR][1000 genomes] |
| rs73822697 | 1.00[AMR][1000 genomes] |
| rs73822701 | 1.00[AMR][1000 genomes] |
| rs73825905 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73825908 | 1.00[AMR][1000 genomes] |
| rs73825909 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs873451 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533980 | chr3:23445901-24311972 | ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 64 gene(s) | inside rSNPs | diseases |
| 2 | nsv834638 | chr3:23963860-24117191 | Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 3 | nsv834639 | chr3:24037113-24233925 | Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| 4 | nsv1004037 | chr3:24064777-24143719 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24101400-24119200 | Weak transcription | Aorta | Aorta |
