Variant report

Variant	rs73822689
Chromosome Location	chr3:24088602-24088603
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24086798..24089297-chr3:24089834..24092711,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11920383	1.00[EUR][1000 genomes]
rs11923991	1.00[AMR][1000 genomes]
rs11924501	1.00[EUR][1000 genomes]
rs11924778	1.00[EUR][1000 genomes]
rs17014086	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1900996	1.00[EUR][1000 genomes]
rs1900997	1.00[EUR][1000 genomes]
rs2089850	1.00[AMR][1000 genomes]
rs4377442	1.00[EUR][1000 genomes]
rs4467390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4510334	1.00[AMR][1000 genomes]
rs56229046	1.00[AMR][1000 genomes]
rs56259756	1.00[EUR][1000 genomes]
rs56711878	1.00[EUR][1000 genomes]
rs58538965	1.00[EUR][1000 genomes]
rs58996984	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59740610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60523116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60723945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61543192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6550843	1.00[EUR][1000 genomes]
rs73134545	1.00[EUR][1000 genomes]
rs73134552	1.00[EUR][1000 genomes]
rs73134553	1.00[EUR][1000 genomes]
rs73134559	1.00[EUR][1000 genomes]
rs73822649	1.00[AMR][1000 genomes]
rs73822653	1.00[AMR][1000 genomes]
rs73822697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825905	1.00[AMR][1000 genomes]
rs73825908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825909	1.00[AMR][1000 genomes]
rs73825915	1.00[EUR][1000 genomes]
rs73825916	1.00[EUR][1000 genomes]
rs73825917	1.00[EUR][1000 genomes]
rs73825918	1.00[EUR][1000 genomes]
rs73825919	1.00[EUR][1000 genomes]
rs73825920	1.00[EUR][1000 genomes]
rs7637983	1.00[EUR][1000 genomes]
rs873451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24079600-24090400	Weak transcription	Lung	lung
2	chr3:24083400-24089000	Weak transcription	Psoas Muscle	Psoas
3	chr3:24084600-24088800	Weak transcription	HSMMtube	muscle
4	chr3:24084600-24089000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:24084600-24089400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:24084800-24088800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:24084800-24088800	Weak transcription	NHLF	lung
8	chr3:24085000-24088800	Weak transcription	Ovary	ovary
9	chr3:24085000-24089000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:24085000-24089000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr3:24085000-24089000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:24085200-24088800	Weak transcription	Adipose Nuclei	Adipose
13	chr3:24085200-24089200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr3:24086200-24088800	Weak transcription	Placenta	Placenta
15	chr3:24087000-24088800	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:24087800-24089200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:24088000-24089000	Weak transcription	Aorta	Aorta
18	chr3:24088200-24091400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr3:24088400-24091800	Enhancers	NHDF-Ad	bronchial
20	chr3:24088600-24089600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:24088600-24090600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:24088600-24090600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:24088600-24090800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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