Variant report

Variant	rs73822653
Chromosome Location	chr3:24070367-24070368
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11923991	1.00[AMR][1000 genomes]
rs17014086	1.00[AMR][1000 genomes]
rs17014087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2089850	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4467390	1.00[AMR][1000 genomes]
rs4510334	1.00[AMR][1000 genomes]
rs56229046	1.00[AMR][1000 genomes]
rs58996984	1.00[AMR][1000 genomes]
rs59740610	1.00[AMR][1000 genomes]
rs60523116	1.00[AMR][1000 genomes]
rs60723945	1.00[AMR][1000 genomes]
rs61543192	1.00[AMR][1000 genomes]
rs73822649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73822689	1.00[AMR][1000 genomes]
rs73822697	1.00[AMR][1000 genomes]
rs73822701	1.00[AMR][1000 genomes]
rs73825905	1.00[AMR][1000 genomes]
rs73825908	1.00[AMR][1000 genomes]
rs73825909	1.00[AMR][1000 genomes]
rs873451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv536523	chr3:24041166-24076110	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24069000-24070600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:24069000-24070600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:24069000-24070800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:24069000-24070800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:24069800-24070400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:24070000-24070800	Enhancers	Ovary	ovary
7	chr3:24070200-24070600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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