Variant report

Variant	rs60723945
Chromosome Location	chr3:24106714-24106715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23956560..23959244-chr3:24104963..24107310,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction
ENSG00000197885	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11920383	1.00[EUR][1000 genomes]
rs11924501	1.00[EUR][1000 genomes]
rs11924778	1.00[EUR][1000 genomes]
rs17014086	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17014087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1900996	1.00[EUR][1000 genomes]
rs1900997	1.00[EUR][1000 genomes]
rs2089850	1.00[AMR][1000 genomes]
rs4377442	1.00[EUR][1000 genomes]
rs4467390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4510334	1.00[AMR][1000 genomes]
rs56229046	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56259756	1.00[EUR][1000 genomes]
rs56711878	1.00[EUR][1000 genomes]
rs58538965	1.00[EUR][1000 genomes]
rs58996984	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59740610	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60523116	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61543192	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6550843	1.00[EUR][1000 genomes]
rs73134545	1.00[EUR][1000 genomes]
rs73134552	1.00[EUR][1000 genomes]
rs73134553	1.00[EUR][1000 genomes]
rs73134559	1.00[EUR][1000 genomes]
rs73822649	1.00[AMR][1000 genomes]
rs73822653	1.00[AMR][1000 genomes]
rs73822689	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822697	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73822701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825905	1.00[AMR][1000 genomes]
rs73825908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73825909	1.00[AMR][1000 genomes]
rs73825915	1.00[EUR][1000 genomes]
rs73825916	1.00[EUR][1000 genomes]
rs73825917	1.00[EUR][1000 genomes]
rs73825918	1.00[EUR][1000 genomes]
rs73825919	1.00[EUR][1000 genomes]
rs73825920	1.00[EUR][1000 genomes]
rs7637983	1.00[EUR][1000 genomes]
rs873451	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834638	chr3:23963860-24117191	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv834639	chr3:24037113-24233925	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1004037	chr3:24064777-24143719	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24101400-24119200	Weak transcription	Aorta	Aorta
2	chr3:24102200-24109200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:24102200-24110400	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:24102400-24106800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:24105000-24110200	Weak transcription	Rectal Smooth Muscle	rectum

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