Variant report

Variant	rs56285685
Chromosome Location	chr3:68519267-68519268
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17047708	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17047742	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17047774	0.83[ASN][1000 genomes]
rs2036811	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs2036812	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2202976	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56064707	0.80[ASN][1000 genomes]
rs59001415	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6809703	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72921003	0.82[ASN][1000 genomes]
rs73837656	0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834721	chr3:68365963-68526394	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68508400-68520000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links