Variant report

Variant	rs6809703
Chromosome Location	chr3:68528787-68528788
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17047708	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17047742	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17047774	0.81[YRI][hapmap];0.92[ASN][1000 genomes]
rs2036811	0.87[ASN][1000 genomes]
rs2036812	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2202976	0.88[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4855488	0.81[YRI][hapmap]
rs56064707	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs56285685	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59001415	0.91[ASN][1000 genomes]
rs6771965	0.92[YRI][hapmap]
rs6772010	0.84[YRI][hapmap]
rs72921003	0.99[ASN][1000 genomes]
rs73837656	0.97[ASN][1000 genomes]
rs907081	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876927	chr3:68505398-68544442	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876928	chr3:68505398-68551172	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68523000-68531600	Weak transcription	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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