Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:68548311..68550713-chr3:68552898..68555029,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10514723	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs11713541	0.82[YRI][hapmap]
rs11925200	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17047708	0.94[JPT][hapmap]
rs17047742	0.90[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs17047807	1.00[MEX][hapmap]
rs2036811	0.83[ASN][1000 genomes]
rs2036812	0.85[ASN][1000 genomes]
rs2202976	0.90[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.91[ASN][1000 genomes]
rs4855488	0.92[YRI][hapmap]
rs56064707	0.93[ASN][1000 genomes]
rs56285685	0.83[ASN][1000 genomes]
rs59001415	0.89[ASN][1000 genomes]
rs6771965	0.89[JPT][hapmap];0.90[LWK][hapmap];0.80[MKK][hapmap];0.89[YRI][hapmap]
rs6772010	0.87[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs6804619	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6809703	0.81[YRI][hapmap];0.92[ASN][1000 genomes]
rs72921003	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73837656	0.93[ASN][1000 genomes]
rs907081	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1832396	chr3:68478762-68641509	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876929	chr3:68508137-68565824	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68552600-68554000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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