Variant report
| Variant | rs6771965 |
|---|---|
| Chromosome Location | chr3:68539374-68539375 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10514723 | 0.89[JPT][hapmap];0.80[YRI][hapmap] |
| rs11713541 | 0.85[YRI][hapmap] |
| rs11925200 | 0.89[JPT][hapmap] |
| rs17047573 | 1.00[TSI][hapmap] |
| rs17047586 | 1.00[TSI][hapmap] |
| rs17047626 | 1.00[TSI][hapmap] |
| rs17047708 | 0.83[JPT][hapmap] |
| rs17047742 | 0.84[JPT][hapmap];1.00[TSI][hapmap] |
| rs17047774 | 0.89[JPT][hapmap];0.90[LWK][hapmap];0.80[MKK][hapmap];0.89[YRI][hapmap] |
| rs17047788 | 1.00[GIH][hapmap];0.80[JPT][hapmap];1.00[TSI][hapmap] |
| rs2036812 | 0.81[AMR][1000 genomes] |
| rs2202976 | 0.84[ASW][hapmap];0.84[JPT][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes] |
| rs4855488 | 0.92[YRI][hapmap] |
| rs56064707 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6772010 | 1.00[GIH][hapmap];0.80[JPT][hapmap];0.82[LWK][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap] |
| rs6804619 | 0.94[JPT][hapmap] |
| rs6809703 | 0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs73837656 | 1.00[EUR][1000 genomes] |
| rs907081 | 0.93[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1832396 | chr3:68478762-68641509 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv876927 | chr3:68505398-68544442 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv876928 | chr3:68505398-68551172 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv876929 | chr3:68508137-68565824 | ZNF genes & repeats Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
