Variant report

Variant	rs56344210
Chromosome Location	chr21:16042457-16042458
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17003879	1.00[AMR][1000 genomes]
rs17003885	0.83[AMR][1000 genomes]
rs17003916	0.83[AMR][1000 genomes]
rs17003919	0.83[AMR][1000 genomes]
rs17003939	0.83[AMR][1000 genomes]
rs59635777	0.83[AMR][1000 genomes]
rs73894153	1.00[AMR][1000 genomes]
rs73894154	1.00[AMR][1000 genomes]
rs73894155	0.85[AMR][1000 genomes]
rs73894156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73894157	0.83[AMR][1000 genomes]
rs73894178	1.00[AMR][1000 genomes]
rs73894179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73894180	1.00[AMR][1000 genomes]
rs73894183	0.83[AMR][1000 genomes]
rs73894184	0.83[AMR][1000 genomes]
rs73894185	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16042400-16044400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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