Variant report

Variant	rs17003879
Chromosome Location	chr21:16035238-16035239
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr21:16033513-16035276	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000243440	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10222179	1.00[EUR][1000 genomes]
rs11909109	1.00[EUR][1000 genomes]
rs17003822	1.00[EUR][1000 genomes]
rs17003830	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs17003835	1.00[EUR][1000 genomes]
rs17003885	0.83[AMR][1000 genomes]
rs17003916	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs17003919	0.83[AMR][1000 genomes]
rs17003939	0.83[AMR][1000 genomes]
rs55660680	1.00[EUR][1000 genomes]
rs56315338	1.00[EUR][1000 genomes]
rs56344210	1.00[AMR][1000 genomes]
rs57281261	1.00[EUR][1000 genomes]
rs57369522	1.00[EUR][1000 genomes]
rs58711927	1.00[EUR][1000 genomes]
rs59115274	1.00[EUR][1000 genomes]
rs59489313	1.00[EUR][1000 genomes]
rs59635777	0.83[AMR][1000 genomes]
rs60481541	1.00[EUR][1000 genomes]
rs60792477	1.00[EUR][1000 genomes]
rs6516924	1.00[EUR][1000 genomes]
rs7276028	1.00[EUR][1000 genomes]
rs73894114	1.00[EUR][1000 genomes]
rs73894115	1.00[EUR][1000 genomes]
rs73894119	1.00[EUR][1000 genomes]
rs73894121	1.00[EUR][1000 genomes]
rs73894153	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894154	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894155	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894156	1.00[AMR][1000 genomes]
rs73894157	0.83[AMR][1000 genomes]
rs73894178	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894179	1.00[AMR][1000 genomes]
rs73894180	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894183	0.83[AMR][1000 genomes]
rs73894184	0.83[AMR][1000 genomes]
rs73894185	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8128543	1.00[EUR][1000 genomes]
rs8129135	1.00[EUR][1000 genomes]
rs8129964	1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs8131281	1.00[EUR][1000 genomes]
rs9305396	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv3457	chr21:15996855-16042349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16031200-16035400	Weak transcription	K562	blood

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