Variant report

Variant	rs17003835
Chromosome Location	chr21:16010479-16010480
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15916304..15917888-chr21:16008677..16010503,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10222179	1.00[EUR][1000 genomes]
rs11909109	1.00[EUR][1000 genomes]
rs17003822	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003830	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003879	1.00[EUR][1000 genomes]
rs17003885	0.83[AMR][1000 genomes]
rs17003916	0.83[AMR][1000 genomes]
rs17003919	0.83[AMR][1000 genomes]
rs17003939	0.83[AMR][1000 genomes]
rs55660680	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56315338	1.00[EUR][1000 genomes]
rs57281261	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57369522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58711927	1.00[EUR][1000 genomes]
rs59115274	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59489313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59635777	0.83[AMR][1000 genomes]
rs60481541	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60792477	1.00[EUR][1000 genomes]
rs6516924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7276028	1.00[EUR][1000 genomes]
rs73894114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894119	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894121	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894153	1.00[EUR][1000 genomes]
rs73894154	1.00[EUR][1000 genomes]
rs73894155	1.00[EUR][1000 genomes]
rs73894157	0.83[AMR][1000 genomes]
rs73894178	1.00[EUR][1000 genomes]
rs73894180	1.00[EUR][1000 genomes]
rs73894183	0.83[AMR][1000 genomes]
rs73894184	0.83[AMR][1000 genomes]
rs73894185	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8128543	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8129135	1.00[EUR][1000 genomes]
rs8129964	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8131281	1.00[EUR][1000 genomes]
rs9305396	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv3457	chr21:15996855-16042349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16009800-16011000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr21:16010200-16010600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr21:16010200-16011600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links