Variant report
| Variant | rs73894155 |
|---|---|
| Chromosome Location | chr21:16037482-16037483 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10222179 | 1.00[EUR][1000 genomes] |
| rs11909109 | 1.00[EUR][1000 genomes] |
| rs17003822 | 1.00[EUR][1000 genomes] |
| rs17003830 | 1.00[EUR][1000 genomes] |
| rs17003835 | 1.00[EUR][1000 genomes] |
| rs17003879 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55660680 | 1.00[EUR][1000 genomes] |
| rs56315338 | 1.00[EUR][1000 genomes] |
| rs56344210 | 0.85[AMR][1000 genomes] |
| rs57281261 | 1.00[EUR][1000 genomes] |
| rs57369522 | 1.00[EUR][1000 genomes] |
| rs58711927 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59115274 | 1.00[EUR][1000 genomes] |
| rs59489313 | 1.00[EUR][1000 genomes] |
| rs60481541 | 1.00[EUR][1000 genomes] |
| rs60792477 | 1.00[EUR][1000 genomes] |
| rs6516924 | 1.00[EUR][1000 genomes] |
| rs7276028 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73894114 | 1.00[EUR][1000 genomes] |
| rs73894115 | 1.00[EUR][1000 genomes] |
| rs73894119 | 1.00[EUR][1000 genomes] |
| rs73894121 | 1.00[EUR][1000 genomes] |
| rs73894153 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73894154 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73894156 | 0.85[AMR][1000 genomes] |
| rs73894178 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73894179 | 0.85[AMR][1000 genomes] |
| rs73894180 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73894185 | 1.00[EUR][1000 genomes] |
| rs8128543 | 1.00[EUR][1000 genomes] |
| rs8129135 | 1.00[EUR][1000 genomes] |
| rs8129964 | 1.00[EUR][1000 genomes] |
| rs8131281 | 1.00[EUR][1000 genomes] |
| rs9305396 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834045 | chr21:15900678-16112850 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv834046 | chr21:15903792-16077369 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv3457 | chr21:15996855-16042349 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:16037200-16037600 | Enhancers | Primary T helper naive cells from peripheral blood | blood |
| 2 | chr21:16037200-16038800 | Enhancers | Primary T cells from cord blood | blood |
