Variant report

Variant	rs17003822
Chromosome Location	chr21:16002867-16002868
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15978384..15981097-chr21:16000750..16003458,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10222179	1.00[EUR][1000 genomes]
rs11909109	1.00[EUR][1000 genomes]
rs17003830	0.90[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003835	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003879	1.00[EUR][1000 genomes]
rs17003885	0.83[AMR][1000 genomes]
rs17003916	0.83[AMR][1000 genomes]
rs17003919	0.83[AMR][1000 genomes]
rs17003939	0.83[AMR][1000 genomes]
rs55660680	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56315338	1.00[EUR][1000 genomes]
rs57281261	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57369522	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58711927	1.00[EUR][1000 genomes]
rs59115274	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59489313	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59635777	0.83[AMR][1000 genomes]
rs60481541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60792477	1.00[EUR][1000 genomes]
rs6516924	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7276028	1.00[EUR][1000 genomes]
rs73894114	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894115	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894119	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894153	1.00[EUR][1000 genomes]
rs73894154	1.00[EUR][1000 genomes]
rs73894155	1.00[EUR][1000 genomes]
rs73894157	0.83[AMR][1000 genomes]
rs73894178	1.00[EUR][1000 genomes]
rs73894180	1.00[EUR][1000 genomes]
rs73894183	0.83[AMR][1000 genomes]
rs73894184	0.83[AMR][1000 genomes]
rs73894185	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8128543	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8129135	1.00[EUR][1000 genomes]
rs8129964	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8131281	1.00[EUR][1000 genomes]
rs9305396	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv3457	chr21:15996855-16042349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16001600-16003600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr21:16001800-16003400	Enhancers	K562	blood
3	chr21:16001800-16003600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr21:16001800-16003600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr21:16001800-16003600	Enhancers	Dnd41	blood
6	chr21:16002000-16003800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr21:16002000-16003800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr21:16002400-16003200	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr21:16002400-16003200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr21:16002400-16003200	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr21:16002400-16003200	Enhancers	GM12878-XiMat	blood
12	chr21:16002600-16003200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood

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