Variant report

Variant	rs73894185
Chromosome Location	chr21:16045414-16045415
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16027302..16029189-chr21:16043696..16046360,3	K562	blood:
2	chr21:16044694..16046970-chr21:16047016..16050128,3	K562	blood:
3	chr21:15988650..15990823-chr21:16044821..16046582,2	K562	blood:
4	chr21:16044097..16046561-chr21:16049201..16052244,3	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10222179	1.00[EUR][1000 genomes]
rs11909109	1.00[EUR][1000 genomes]
rs17003822	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003830	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003835	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003879	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17003885	1.00[AMR][1000 genomes]
rs17003916	1.00[AMR][1000 genomes]
rs17003919	1.00[AMR][1000 genomes]
rs17003939	1.00[AMR][1000 genomes]
rs55660680	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56344210	0.83[AMR][1000 genomes]
rs57281261	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57369522	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58711927	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59115274	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59489313	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59635777	1.00[AMR][1000 genomes]
rs60481541	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60792477	1.00[EUR][1000 genomes]
rs6516924	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7276028	1.00[EUR][1000 genomes]
rs73894114	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894115	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894119	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894121	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894153	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894154	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894155	1.00[EUR][1000 genomes]
rs73894156	0.83[AMR][1000 genomes]
rs73894157	1.00[AMR][1000 genomes]
rs73894178	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894179	0.83[AMR][1000 genomes]
rs73894180	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73894183	1.00[AMR][1000 genomes]
rs73894184	1.00[AMR][1000 genomes]
rs73894186	0.83[AMR][1000 genomes]
rs8128543	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8129135	1.00[EUR][1000 genomes]
rs8129964	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8131281	1.00[EUR][1000 genomes]
rs9305396	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16044400-16050000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr21:16044800-16046200	Enhancers	Primary T cells from cord blood	blood
3	chr21:16045000-16045600	Enhancers	Primary B cells from cord blood	blood
4	chr21:16045000-16048000	Enhancers	Dnd41	blood
5	chr21:16045000-16048000	Enhancers	K562	blood
6	chr21:16045200-16046000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr21:16045200-16047800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr21:16045400-16045600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr21:16045400-16046200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links