Variant report

Variant	rs73894183
Chromosome Location	chr21:16043246-16043247
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17003822	0.83[AMR][1000 genomes]
rs17003830	0.83[AMR][1000 genomes]
rs17003835	0.83[AMR][1000 genomes]
rs17003879	0.83[AMR][1000 genomes]
rs17003885	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003916	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003919	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17003939	1.00[AMR][1000 genomes]
rs55660680	0.83[AMR][1000 genomes]
rs56344210	0.83[AMR][1000 genomes]
rs57281261	0.83[AMR][1000 genomes]
rs57369522	0.83[AMR][1000 genomes]
rs58711927	0.83[AMR][1000 genomes]
rs59115274	0.83[AMR][1000 genomes]
rs59489313	0.83[AMR][1000 genomes]
rs59635777	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60481541	0.83[AMR][1000 genomes]
rs6516924	0.83[AMR][1000 genomes]
rs73894114	0.83[AMR][1000 genomes]
rs73894115	0.83[AMR][1000 genomes]
rs73894119	0.83[AMR][1000 genomes]
rs73894121	0.83[AMR][1000 genomes]
rs73894153	0.83[AMR][1000 genomes]
rs73894154	0.83[AMR][1000 genomes]
rs73894156	0.83[AMR][1000 genomes]
rs73894157	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73894178	0.83[AMR][1000 genomes]
rs73894179	0.83[AMR][1000 genomes]
rs73894180	0.83[AMR][1000 genomes]
rs73894184	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73894185	1.00[AMR][1000 genomes]
rs73894186	0.83[AMR][1000 genomes]
rs8128543	0.83[AMR][1000 genomes]
rs8129964	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16042400-16044400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr21:16042800-16043600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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