Variant report

Variant	rs56373896
Chromosome Location	chr7:112341916-112341917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56182588	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6945755	1.00[EUR][1000 genomes]
rs6958435	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73203458	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205141	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205142	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205145	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205152	1.00[EUR][1000 genomes]
rs73205159	0.81[EUR][1000 genomes]
rs73205164	1.00[EUR][1000 genomes]
rs73205167	1.00[EUR][1000 genomes]
rs73205169	0.81[EUR][1000 genomes]
rs73205175	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112339400-112342200	Enhancers	Stomach Mucosa	stomach
2	chr7:112339600-112342400	Enhancers	Fetal Intestine Large	intestine
3	chr7:112339800-112342400	Enhancers	Duodenum Mucosa	Duodenum
4	chr7:112340000-112342400	Enhancers	Fetal Intestine Small	intestine
5	chr7:112340200-112342200	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr7:112340800-112342000	Enhancers	Placenta	Placenta
7	chr7:112341200-112342000	Weak transcription	Small Intestine	intestine
8	chr7:112341600-112342000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:112341600-112342200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:112341800-112342200	Enhancers	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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