Variant report

Variant	rs73205142
Chromosome Location	chr7:112361250-112361251
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56182588	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56373896	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945755	1.00[EUR][1000 genomes]
rs6958435	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73203458	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205139	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205147	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205152	1.00[EUR][1000 genomes]
rs73205159	0.81[EUR][1000 genomes]
rs73205164	1.00[EUR][1000 genomes]
rs73205167	1.00[EUR][1000 genomes]
rs73205169	0.81[EUR][1000 genomes]
rs73205175	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112360800-112362800	Enhancers	Fetal Brain Male	brain
2	chr7:112361000-112362600	Enhancers	Brain Germinal Matrix	brain
3	chr7:112361200-112361800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:112361200-112361800	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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