Variant report

Variant	rs73205167
Chromosome Location	chr7:112424650-112424651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:112421571..112428519-chr7:112428661..112431818,11	MCF-7	breast:
2	chr7:112417809..112419627-chr7:112422928..112424972,2	MCF-7	breast:
3	chr7:112421681..112427261-chr7:112427948..112432124,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000146802	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56182588	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56373896	1.00[EUR][1000 genomes]
rs6945755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6958435	0.95[EUR][1000 genomes]
rs73203458	0.95[EUR][1000 genomes]
rs73205139	1.00[EUR][1000 genomes]
rs73205141	1.00[EUR][1000 genomes]
rs73205142	1.00[EUR][1000 genomes]
rs73205145	1.00[EUR][1000 genomes]
rs73205147	1.00[EUR][1000 genomes]
rs73205152	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205159	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73205164	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205169	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73205175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	esv2752144	chr7:112398372-112499924	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1794529	chr7:112400060-112588376	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112393600-112429800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:112396200-112428600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:112397000-112428000	Weak transcription	Fetal Intestine Small	intestine
4	chr7:112397600-112429600	Weak transcription	Pancreas	Pancrea
5	chr7:112398800-112428800	Weak transcription	Gastric	stomach
6	chr7:112400000-112426800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:112400200-112429000	Weak transcription	HSMM	muscle
8	chr7:112400600-112428600	Weak transcription	Brain Substantia Nigra	brain
9	chr7:112403400-112428600	Weak transcription	Fetal Stomach	stomach
10	chr7:112404800-112427000	Weak transcription	Small Intestine	intestine
11	chr7:112404800-112428800	Weak transcription	Spleen	Spleen
12	chr7:112405400-112428400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:112405600-112428800	Weak transcription	Osteobl	bone
14	chr7:112405800-112428200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:112405800-112428800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr7:112406000-112428800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr7:112406000-112429000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:112406400-112428800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:112406400-112429000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:112406600-112428400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr7:112407800-112428600	Weak transcription	Ovary	ovary
22	chr7:112410600-112428600	Weak transcription	Fetal Lung	lung
23	chr7:112410600-112428600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:112411400-112428400	Weak transcription	Brain Anterior Caudate	brain
25	chr7:112411600-112428600	Weak transcription	Colon Smooth Muscle	Colon
26	chr7:112411800-112428800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr7:112413000-112428600	Weak transcription	Fetal Kidney	kidney
28	chr7:112413200-112429000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:112413800-112429000	Weak transcription	Esophagus	oesophagus
30	chr7:112418400-112428400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr7:112418400-112428600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr7:112418600-112429000	Weak transcription	Placenta	Placenta
33	chr7:112419000-112425000	Strong transcription	Primary B cells from cord blood	blood
34	chr7:112419400-112429200	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:112419600-112428600	Weak transcription	Fetal Brain Female	brain
36	chr7:112419800-112424800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr7:112419800-112428600	Weak transcription	NHLF	lung
38	chr7:112420000-112424800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:112421600-112428200	Weak transcription	Dnd41	blood
40	chr7:112421600-112428400	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:112421600-112428400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr7:112421600-112428800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr7:112422000-112428400	Weak transcription	Stomach Mucosa	stomach
44	chr7:112422200-112428600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:112422400-112424800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr7:112422400-112425000	Strong transcription	Primary T cells from cord blood	blood
47	chr7:112422400-112425000	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr7:112422400-112425000	Strong transcription	Duodenum Mucosa	Duodenum
49	chr7:112422400-112425000	Strong transcription	Fetal Intestine Large	intestine
50	chr7:112422400-112425000	Strong transcription	Fetal Thymus	thymus

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