Variant report

Variant	rs73205141
Chromosome Location	chr7:112355378-112355379
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56182588	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56373896	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6945755	1.00[EUR][1000 genomes]
rs6958435	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73203458	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205139	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205142	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205147	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205152	1.00[EUR][1000 genomes]
rs73205159	0.81[EUR][1000 genomes]
rs73205164	1.00[EUR][1000 genomes]
rs73205167	1.00[EUR][1000 genomes]
rs73205169	0.81[EUR][1000 genomes]
rs73205175	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112354800-112355800	Enhancers	K562	blood
2	chr7:112355000-112356200	Enhancers	Stomach Mucosa	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links