Variant report

Variant	rs73203458
Chromosome Location	chr7:112318350-112318351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56182588	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56373896	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6945755	0.95[EUR][1000 genomes]
rs6958435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73205139	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205141	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205142	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205145	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205147	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73205152	0.95[EUR][1000 genomes]
rs73205164	0.95[EUR][1000 genomes]
rs73205167	0.95[EUR][1000 genomes]
rs73205175	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv889055	chr7:112174089-112353440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112312800-112319000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr7:112313200-112319000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:112317600-112318600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr7:112317600-112318800	Enhancers	Placenta	Placenta
5	chr7:112318000-112318600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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