Variant report
| Variant | rs56389241 |
|---|---|
| Chromosome Location | chr10:117472286-117472287 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:117468027..117471001-chr10:117471379..117473007,2 | MCF-7 | breast: | |
| 2 | chr10:117470176..117472833-chr10:118030430..118034037,4 | MCF-7 | breast: | |
| 3 | chr10:117467828..117469651-chr10:117471343..117473666,2 | MCF-7 | breast: | |
| 4 | chr10:117421992..117426974-chr10:117467118..117472405,7 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151892 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11197396 | 0.80[AFR][1000 genomes] |
| rs11197400 | 0.80[AFR][1000 genomes] |
| rs11197425 | 0.92[AFR][1000 genomes] |
| rs12245971 | 0.92[AFR][1000 genomes] |
| rs12246558 | 0.96[AFR][1000 genomes] |
| rs12250994 | 0.96[AFR][1000 genomes] |
| rs12253379 | 0.83[AFR][1000 genomes] |
| rs12254907 | 0.96[AFR][1000 genomes] |
| rs12256657 | 0.92[AFR][1000 genomes] |
| rs12257990 | 0.92[AFR][1000 genomes] |
| rs12258300 | 0.96[AFR][1000 genomes] |
| rs12258619 | 0.80[AFR][1000 genomes] |
| rs12264068 | 0.88[AFR][1000 genomes] |
| rs12265282 | 0.85[AFR][1000 genomes] |
| rs12266553 | 0.80[AFR][1000 genomes] |
| rs13377136 | 1.00[AFR][1000 genomes] |
| rs55672619 | 0.83[AFR][1000 genomes] |
| rs74158233 | 0.80[AFR][1000 genomes] |
| rs74158251 | 0.92[AFR][1000 genomes] |
| rs74158258 | 0.92[AFR][1000 genomes] |
| rs74158276 | 0.88[AFR][1000 genomes] |
| rs74160703 | 0.84[AFR][1000 genomes] |
| rs74161619 | 0.80[AFR][1000 genomes] |
| rs74161623 | 0.80[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117471000-117490600 | Weak transcription | Aorta | Aorta |
