Variant report
| Variant | rs13377136 |
|---|---|
| Chromosome Location | chr10:117466593-117466594 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:117424165..117428344-chr10:117465614..117471494,6 | MCF-7 | breast: | |
| 2 | chr10:117465313..117467973-chr10:118033324..118035057,2 | MCF-7 | breast: | |
| 3 | chr10:117464567..117466683-chr10:118027769..118030068,2 | MCF-7 | breast: | |
| 4 | chr10:117464181..117466905-chr10:117467823..117469995,2 | MCF-7 | breast: | |
| 5 | chr10:117466022..117468481-chr10:118032904..118034979,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151892 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:39)
| rs_ID | r2[population] |
|---|---|
| rs11197263 | 1.00[YRI][hapmap] |
| rs11197296 | 1.00[YRI][hapmap] |
| rs11197396 | 0.80[AFR][1000 genomes] |
| rs11197400 | 0.80[AFR][1000 genomes] |
| rs11197404 | 1.00[YRI][hapmap] |
| rs11197425 | 0.92[AFR][1000 genomes] |
| rs12240928 | 1.00[YRI][hapmap] |
| rs12245110 | 1.00[YRI][hapmap] |
| rs12245971 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs12246558 | 0.96[AFR][1000 genomes] |
| rs12248834 | 1.00[YRI][hapmap] |
| rs12250994 | 0.96[AFR][1000 genomes] |
| rs12252706 | 1.00[YRI][hapmap] |
| rs12253379 | 0.83[AFR][1000 genomes] |
| rs12254907 | 0.96[AFR][1000 genomes] |
| rs12256635 | 1.00[YRI][hapmap] |
| rs12256657 | 0.92[AFR][1000 genomes] |
| rs12257186 | 1.00[YRI][hapmap] |
| rs12257254 | 1.00[YRI][hapmap] |
| rs12257990 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs12258300 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs12258619 | 0.80[AFR][1000 genomes] |
| rs12260062 | 1.00[YRI][hapmap] |
| rs12264068 | 0.88[AFR][1000 genomes] |
| rs12264880 | 1.00[YRI][hapmap] |
| rs12264898 | 1.00[YRI][hapmap] |
| rs12265282 | 0.85[AFR][1000 genomes] |
| rs12266553 | 0.80[AFR][1000 genomes] |
| rs12267217 | 1.00[YRI][hapmap] |
| rs55672619 | 0.83[AFR][1000 genomes] |
| rs56389241 | 1.00[AFR][1000 genomes] |
| rs7089941 | 1.00[YRI][hapmap] |
| rs74158233 | 0.80[AFR][1000 genomes] |
| rs74158251 | 0.92[AFR][1000 genomes] |
| rs74158258 | 0.92[AFR][1000 genomes] |
| rs74158276 | 0.88[AFR][1000 genomes] |
| rs74160703 | 0.84[AFR][1000 genomes] |
| rs74161619 | 0.80[AFR][1000 genomes] |
| rs74161623 | 0.80[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117466000-117470000 | Weak transcription | HSMMtube | muscle |
