Variant report
| Variant | rs12258300 |
|---|---|
| Chromosome Location | chr10:117478837-117478838 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11197296 | 0.87[YRI][hapmap] |
| rs11197404 | 0.85[YRI][hapmap] |
| rs11197425 | 0.96[AFR][1000 genomes] |
| rs12240928 | 1.00[YRI][hapmap] |
| rs12245110 | 0.85[YRI][hapmap] |
| rs12245971 | 0.88[AFR][1000 genomes] |
| rs12246558 | 1.00[AFR][1000 genomes] |
| rs12248834 | 0.85[YRI][hapmap] |
| rs12250994 | 1.00[AFR][1000 genomes] |
| rs12252706 | 0.87[YRI][hapmap] |
| rs12254907 | 1.00[AFR][1000 genomes] |
| rs12256635 | 0.85[YRI][hapmap] |
| rs12256657 | 0.88[AFR][1000 genomes] |
| rs12257186 | 0.85[YRI][hapmap] |
| rs12257254 | 1.00[YRI][hapmap] |
| rs12257990 | 0.87[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs12258619 | 0.84[AFR][1000 genomes] |
| rs12260062 | 1.00[YRI][hapmap] |
| rs12264068 | 0.84[AFR][1000 genomes] |
| rs12264880 | 0.85[YRI][hapmap] |
| rs12264898 | 0.87[YRI][hapmap] |
| rs12265264 | 0.88[YRI][hapmap] |
| rs12265282 | 0.81[AFR][1000 genomes] |
| rs12267217 | 1.00[YRI][hapmap] |
| rs13377136 | 1.00[YRI][hapmap];0.96[AFR][1000 genomes] |
| rs56389241 | 0.96[AFR][1000 genomes] |
| rs7089941 | 0.87[YRI][hapmap] |
| rs74158251 | 0.88[AFR][1000 genomes] |
| rs74158258 | 0.88[AFR][1000 genomes] |
| rs74158276 | 0.84[AFR][1000 genomes] |
| rs74160703 | 0.80[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117471000-117490600 | Weak transcription | Aorta | Aorta |
