Variant report
| Variant | rs12257990 |
|---|---|
| Chromosome Location | chr10:117454199-117454200 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:61)
| rs_ID | r2[population] |
|---|---|
| rs11197263 | 1.00[YRI][hapmap] |
| rs11197291 | 0.87[YRI][hapmap] |
| rs11197296 | 1.00[YRI][hapmap] |
| rs11197304 | 0.87[YRI][hapmap] |
| rs11197348 | 0.87[YRI][hapmap] |
| rs11197349 | 0.87[YRI][hapmap] |
| rs11197351 | 0.87[YRI][hapmap] |
| rs11197352 | 0.87[YRI][hapmap] |
| rs11197370 | 0.85[YRI][hapmap] |
| rs11197386 | 0.87[YRI][hapmap] |
| rs11197391 | 0.87[YRI][hapmap] |
| rs11197393 | 0.87[YRI][hapmap] |
| rs11197396 | 0.80[AFR][1000 genomes] |
| rs11197400 | 0.80[AFR][1000 genomes] |
| rs11197404 | 1.00[YRI][hapmap] |
| rs11197425 | 0.85[AFR][1000 genomes] |
| rs12240499 | 0.87[YRI][hapmap] |
| rs12240928 | 1.00[YRI][hapmap] |
| rs12243983 | 0.87[YRI][hapmap] |
| rs12245110 | 1.00[YRI][hapmap] |
| rs12245971 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs12246358 | 0.87[YRI][hapmap] |
| rs12246558 | 0.88[AFR][1000 genomes] |
| rs12247539 | 0.87[YRI][hapmap] |
| rs12248834 | 1.00[YRI][hapmap] |
| rs12250994 | 0.88[AFR][1000 genomes] |
| rs12252706 | 1.00[YRI][hapmap] |
| rs12252733 | 0.87[YRI][hapmap] |
| rs12253056 | 0.87[YRI][hapmap] |
| rs12253279 | 0.85[YRI][hapmap] |
| rs12253379 | 0.83[AFR][1000 genomes] |
| rs12254907 | 0.88[AFR][1000 genomes] |
| rs12256161 | 0.87[YRI][hapmap] |
| rs12256635 | 1.00[YRI][hapmap] |
| rs12256657 | 0.85[AFR][1000 genomes] |
| rs12257186 | 1.00[YRI][hapmap] |
| rs12257254 | 1.00[YRI][hapmap] |
| rs12258300 | 0.87[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs12260062 | 1.00[YRI][hapmap] |
| rs12260896 | 0.87[YRI][hapmap] |
| rs12261137 | 0.87[YRI][hapmap] |
| rs12264880 | 1.00[YRI][hapmap] |
| rs12264898 | 1.00[YRI][hapmap] |
| rs12265282 | 0.92[AFR][1000 genomes] |
| rs12265574 | 0.87[YRI][hapmap] |
| rs12265922 | 0.87[YRI][hapmap] |
| rs12266553 | 0.80[AFR][1000 genomes] |
| rs12267217 | 0.85[YRI][hapmap] |
| rs12267791 | 0.83[YRI][hapmap] |
| rs13377136 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes] |
| rs55672619 | 0.83[AFR][1000 genomes] |
| rs56389241 | 0.92[AFR][1000 genomes] |
| rs7072224 | 0.83[YRI][hapmap] |
| rs7084607 | 0.87[YRI][hapmap] |
| rs7089047 | 0.87[YRI][hapmap] |
| rs7089941 | 1.00[YRI][hapmap] |
| rs74158233 | 0.80[AFR][1000 genomes] |
| rs74158251 | 1.00[AFR][1000 genomes] |
| rs74158258 | 0.85[AFR][1000 genomes] |
| rs74161619 | 0.80[AFR][1000 genomes] |
| rs74161623 | 0.80[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117447000-117465600 | Weak transcription | HSMM | muscle |
