Variant report

Variant	rs7089047
Chromosome Location	chr10:117412607-117412608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117410949..117413224-chr10:117414912..117417094,2	K562	blood:

rs_ID	r²[population]
rs10159493	0.94[AFR][1000 genomes]
rs10159500	1.00[AFR][1000 genomes]
rs10159871	0.94[AFR][1000 genomes]
rs10159881	1.00[AFR][1000 genomes]
rs10160074	0.94[AFR][1000 genomes]
rs11197263	1.00[YRI][hapmap]
rs11197291	1.00[YRI][hapmap]
rs11197296	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs11197304	1.00[YRI][hapmap]
rs11197348	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11197349	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11197350	0.91[AFR][1000 genomes]
rs11197351	1.00[YRI][hapmap]
rs11197352	1.00[YRI][hapmap]
rs11197354	0.91[AFR][1000 genomes]
rs11197356	0.91[AFR][1000 genomes]
rs11197370	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11197378	1.00[AFR][1000 genomes]
rs11197379	1.00[AFR][1000 genomes]
rs11197380	1.00[AFR][1000 genomes]
rs11197381	1.00[AFR][1000 genomes]
rs11197386	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11197387	1.00[AFR][1000 genomes]
rs11197388	1.00[AFR][1000 genomes]
rs11197389	1.00[AFR][1000 genomes]
rs11197390	1.00[AFR][1000 genomes]
rs11197391	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11197393	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11197394	0.94[AFR][1000 genomes]
rs11197395	1.00[AFR][1000 genomes]
rs11197402	0.82[AFR][1000 genomes]
rs11197403	0.82[AFR][1000 genomes]
rs11197404	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs11197405	0.82[AFR][1000 genomes]
rs11197406	0.82[AFR][1000 genomes]
rs12240499	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12240928	0.91[AFR][1000 genomes]
rs12243983	1.00[YRI][hapmap]
rs12245110	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12245229	0.82[AFR][1000 genomes]
rs12245317	0.91[AFR][1000 genomes]
rs12245412	1.00[AFR][1000 genomes]
rs12245465	1.00[AFR][1000 genomes]
rs12246227	1.00[AFR][1000 genomes]
rs12246242	1.00[AFR][1000 genomes]
rs12246295	1.00[AFR][1000 genomes]
rs12246358	1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12246470	1.00[AFR][1000 genomes]
rs12246781	0.87[YRI][hapmap]
rs12247539	1.00[YRI][hapmap]
rs12247972	0.84[AFR][1000 genomes]
rs12248813	0.87[YRI][hapmap]
rs12248834	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12249141	0.82[AFR][1000 genomes]
rs12249348	0.91[AFR][1000 genomes]
rs12252706	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs12252733	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12252772	0.82[AFR][1000 genomes]
rs12252900	0.82[AFR][1000 genomes]
rs12252981	1.00[AFR][1000 genomes]
rs12253056	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12253279	1.00[YRI][hapmap]
rs12254795	0.81[LWK][hapmap]
rs12254841	1.00[AFR][1000 genomes]
rs12255030	1.00[AFR][1000 genomes]
rs12256161	1.00[YRI][hapmap]
rs12256635	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12257164	0.80[AFR][1000 genomes]
rs12257186	0.85[YRI][hapmap];0.91[AFR][1000 genomes]
rs12257254	0.91[AFR][1000 genomes]
rs12257990	0.87[YRI][hapmap]
rs12260062	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12260891	1.00[AFR][1000 genomes]
rs12260896	1.00[YRI][hapmap]
rs12260912	0.88[YRI][hapmap]
rs12261137	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12261191	1.00[AFR][1000 genomes]
rs12261328	0.97[AFR][1000 genomes]
rs12261735	0.82[AFR][1000 genomes]
rs12262956	1.00[AFR][1000 genomes]
rs12264880	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs12264898	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs12265574	1.00[YRI][hapmap]
rs12265922	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12267242	0.87[YRI][hapmap]
rs12267791	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs12267941	0.91[AFR][1000 genomes]
rs12269447	1.00[AFR][1000 genomes]
rs28773857	0.91[AFR][1000 genomes]
rs56032448	0.94[AFR][1000 genomes]
rs56158529	0.97[AFR][1000 genomes]
rs57352585	1.00[AFR][1000 genomes]
rs59118492	0.91[AFR][1000 genomes]
rs59377038	0.94[AFR][1000 genomes]
rs60031269	0.82[AFR][1000 genomes]
rs60160808	1.00[AFR][1000 genomes]
rs61707910	0.82[AFR][1000 genomes]
rs7084607	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7089941	0.87[YRI][hapmap]
rs74158210	1.00[AFR][1000 genomes]
rs74158212	1.00[AFR][1000 genomes]
rs74158213	1.00[AFR][1000 genomes]
rs74158214	1.00[AFR][1000 genomes]
rs74158215	1.00[AFR][1000 genomes]
rs74158216	0.94[AFR][1000 genomes]
rs74158217	1.00[AFR][1000 genomes]
rs74158218	0.94[AFR][1000 genomes]
rs74158220	1.00[AFR][1000 genomes]
rs74158221	0.94[AFR][1000 genomes]
rs74158222	1.00[AFR][1000 genomes]
rs74158223	1.00[AFR][1000 genomes]
rs74158231	1.00[AFR][1000 genomes]
rs74158232	1.00[AFR][1000 genomes]
rs74158234	0.94[AFR][1000 genomes]
rs74158235	0.94[AFR][1000 genomes]
rs74158237	0.94[AFR][1000 genomes]
rs74158238	0.94[AFR][1000 genomes]
rs74158239	0.91[AFR][1000 genomes]
rs74158240	0.89[AFR][1000 genomes]
rs74158242	0.91[AFR][1000 genomes]
rs74158243	0.91[AFR][1000 genomes]
rs74158244	0.91[AFR][1000 genomes]
rs74158245	0.91[AFR][1000 genomes]
rs74158246	0.91[AFR][1000 genomes]
rs74158247	0.91[AFR][1000 genomes]
rs74158248	0.82[AFR][1000 genomes]
rs74158249	0.82[AFR][1000 genomes]
rs74158250	0.82[AFR][1000 genomes]
rs74158252	0.82[AFR][1000 genomes]
rs74158257	0.82[AFR][1000 genomes]
rs74158401	0.91[AFR][1000 genomes]
rs74161605	0.91[AFR][1000 genomes]
rs74161606	0.91[AFR][1000 genomes]
rs74161607	0.91[AFR][1000 genomes]
rs74161608	0.91[AFR][1000 genomes]
rs74161609	0.91[AFR][1000 genomes]
rs74161610	0.91[AFR][1000 genomes]
rs74161621	1.00[AFR][1000 genomes]

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117404600-117412800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr10:117409600-117412800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr10:117411200-117413000	Weak transcription	HSMM	muscle
4	chr10:117412600-117413400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:117412600-117413600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:117412600-117414200	Enhancers	HepG2	liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links