Variant report
| Variant | rs11197349 |
|---|---|
| Chromosome Location | chr10:117367263-117367264 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:122)
| rs_ID | r2[population] |
|---|---|
| rs10159493 | 0.84[AFR][1000 genomes] |
| rs10159500 | 0.91[AFR][1000 genomes] |
| rs10159871 | 0.84[AFR][1000 genomes] |
| rs10159881 | 0.91[AFR][1000 genomes] |
| rs10160074 | 0.84[AFR][1000 genomes] |
| rs11197263 | 1.00[YRI][hapmap] |
| rs11197291 | 1.00[YRI][hapmap] |
| rs11197296 | 1.00[YRI][hapmap] |
| rs11197304 | 1.00[YRI][hapmap] |
| rs11197347 | 0.84[AFR][1000 genomes] |
| rs11197348 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes] |
| rs11197350 | 1.00[AFR][1000 genomes] |
| rs11197351 | 1.00[YRI][hapmap] |
| rs11197352 | 1.00[YRI][hapmap] |
| rs11197354 | 1.00[AFR][1000 genomes] |
| rs11197356 | 1.00[AFR][1000 genomes] |
| rs11197370 | 1.00[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs11197378 | 0.91[AFR][1000 genomes] |
| rs11197379 | 0.91[AFR][1000 genomes] |
| rs11197380 | 0.91[AFR][1000 genomes] |
| rs11197381 | 0.91[AFR][1000 genomes] |
| rs11197386 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs11197387 | 0.91[AFR][1000 genomes] |
| rs11197388 | 0.91[AFR][1000 genomes] |
| rs11197389 | 0.91[AFR][1000 genomes] |
| rs11197390 | 0.91[AFR][1000 genomes] |
| rs11197391 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs11197393 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs11197394 | 0.85[AFR][1000 genomes] |
| rs11197395 | 0.91[AFR][1000 genomes] |
| rs11197404 | 0.85[YRI][hapmap] |
| rs12240499 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs12240928 | 0.83[AFR][1000 genomes] |
| rs12243983 | 1.00[YRI][hapmap] |
| rs12245110 | 0.85[YRI][hapmap] |
| rs12245317 | 1.00[AFR][1000 genomes] |
| rs12245412 | 0.91[AFR][1000 genomes] |
| rs12245465 | 0.91[AFR][1000 genomes] |
| rs12246227 | 0.91[AFR][1000 genomes] |
| rs12246242 | 0.91[AFR][1000 genomes] |
| rs12246295 | 0.91[AFR][1000 genomes] |
| rs12246358 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs12246470 | 0.91[AFR][1000 genomes] |
| rs12246781 | 0.87[YRI][hapmap] |
| rs12247539 | 1.00[YRI][hapmap] |
| rs12247972 | 0.94[AFR][1000 genomes] |
| rs12248813 | 0.87[YRI][hapmap] |
| rs12248834 | 0.85[YRI][hapmap] |
| rs12249348 | 1.00[AFR][1000 genomes] |
| rs12252706 | 0.87[YRI][hapmap] |
| rs12252733 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes] |
| rs12252981 | 0.91[AFR][1000 genomes] |
| rs12253056 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs12253279 | 1.00[YRI][hapmap] |
| rs12254841 | 0.91[AFR][1000 genomes] |
| rs12255030 | 0.91[AFR][1000 genomes] |
| rs12256161 | 1.00[YRI][hapmap] |
| rs12256635 | 0.85[YRI][hapmap] |
| rs12257164 | 0.88[AFR][1000 genomes] |
| rs12257186 | 0.85[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs12257254 | 0.83[AFR][1000 genomes] |
| rs12257990 | 0.87[YRI][hapmap] |
| rs12260062 | 0.85[YRI][hapmap] |
| rs12260891 | 0.91[AFR][1000 genomes] |
| rs12260896 | 1.00[YRI][hapmap] |
| rs12260912 | 0.88[YRI][hapmap] |
| rs12261137 | 1.00[YRI][hapmap];0.94[AFR][1000 genomes] |
| rs12261191 | 0.91[AFR][1000 genomes] |
| rs12261328 | 0.94[AFR][1000 genomes] |
| rs12262956 | 0.91[AFR][1000 genomes] |
| rs12264880 | 0.85[YRI][hapmap] |
| rs12264898 | 0.87[YRI][hapmap] |
| rs12265574 | 1.00[YRI][hapmap] |
| rs12265922 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs12267242 | 0.87[YRI][hapmap] |
| rs12267791 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs12267941 | 1.00[AFR][1000 genomes] |
| rs12269447 | 0.91[AFR][1000 genomes] |
| rs28773857 | 1.00[AFR][1000 genomes] |
| rs56032448 | 0.84[AFR][1000 genomes] |
| rs56158529 | 0.94[AFR][1000 genomes] |
| rs57352585 | 0.91[AFR][1000 genomes] |
| rs59118492 | 1.00[AFR][1000 genomes] |
| rs59377038 | 0.84[AFR][1000 genomes] |
| rs60160808 | 0.91[AFR][1000 genomes] |
| rs7084607 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs7089047 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs7089941 | 0.87[YRI][hapmap] |
| rs74158210 | 0.91[AFR][1000 genomes] |
| rs74158212 | 0.91[AFR][1000 genomes] |
| rs74158213 | 0.91[AFR][1000 genomes] |
| rs74158214 | 0.91[AFR][1000 genomes] |
| rs74158215 | 0.91[AFR][1000 genomes] |
| rs74158216 | 0.85[AFR][1000 genomes] |
| rs74158217 | 0.91[AFR][1000 genomes] |
| rs74158218 | 0.84[AFR][1000 genomes] |
| rs74158220 | 0.91[AFR][1000 genomes] |
| rs74158221 | 0.84[AFR][1000 genomes] |
| rs74158222 | 0.91[AFR][1000 genomes] |
| rs74158223 | 0.91[AFR][1000 genomes] |
| rs74158231 | 0.91[AFR][1000 genomes] |
| rs74158232 | 0.91[AFR][1000 genomes] |
| rs74158234 | 0.85[AFR][1000 genomes] |
| rs74158235 | 0.85[AFR][1000 genomes] |
| rs74158237 | 0.85[AFR][1000 genomes] |
| rs74158238 | 0.85[AFR][1000 genomes] |
| rs74158239 | 0.83[AFR][1000 genomes] |
| rs74158240 | 0.80[AFR][1000 genomes] |
| rs74158242 | 0.83[AFR][1000 genomes] |
| rs74158243 | 0.83[AFR][1000 genomes] |
| rs74158244 | 0.83[AFR][1000 genomes] |
| rs74158245 | 0.83[AFR][1000 genomes] |
| rs74158246 | 0.83[AFR][1000 genomes] |
| rs74158247 | 0.83[AFR][1000 genomes] |
| rs74158401 | 1.00[AFR][1000 genomes] |
| rs74161605 | 1.00[AFR][1000 genomes] |
| rs74161606 | 1.00[AFR][1000 genomes] |
| rs74161607 | 1.00[AFR][1000 genomes] |
| rs74161608 | 1.00[AFR][1000 genomes] |
| rs74161609 | 1.00[AFR][1000 genomes] |
| rs74161610 | 1.00[AFR][1000 genomes] |
| rs74161621 | 0.91[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:117365400-117367400 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
| 2 | chr10:117366800-117368400 | Weak transcription | HSMM | muscle |
